Job Description P0ABU2 Confidence 94.67% Date Thu Jan 5 11:16:24 GMT 2012 Rank 408 Aligned Residues 141 % Identity 21% Template c2yc2D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas Resolution 2.59 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	A	A	N	F	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	Q	L	A	E	I	V	K	P	Q	R	T	L	P	T	T	M	E	F	V	D	I	A	G	L	V	K	G	A	S	K	G	E	G	L	G	N	Q	F	L	T	N	I	R	E	T	E	A	I	G	H	V	V	R
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		P	I	D	I	T	A	T	L	R	C	K	V	A	V	V	V	A	P	V	T	I	P	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	V	E	L	F	L	L	D	T	A	G	.	.	.	.	.	.	.	S	D	L	Y	K	E	Q	I	S	Q	Y	W	N	G	V	Y	Y	A	I	L	V	F	D
Template Known Secondary structure				S		S																	T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	.	.	.	.	.	.	.	T								S	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.														.	.	.	.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	E	N	D	N	I	I	H	V	S	G	K	V	N	P	A	D	D	I	E	V	I	N	T	E	L	A	L	A	D	L	D	T	C	E	R	A	I	H	R	V	Q	K	K	A	K	G	G	D	K	D	A	K	A	E	L	A	V	L	E	K	C	L	P	Q	L	E	N	A	G	M	L	R	A	L	D	L	S	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		V	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	E	S	F	E	S	C	K	A	W	F	E	L	L	K	S	A	R	P	D	R	E	R	P	L	.	.
Template Known Secondary structure		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S		T	T	S			.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		102	.	.																																																			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		E	E	K	A	A	I	R	Y	L	S	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	E	N	N	P	Y	L	D	Q	V	R	E	I	A	A	K	E	G	S	V	V	V	P	V	C	A	A	V	E	.	.	A	D	I	A	E	L	D	D	E	E	R	D	E	F	M	Q	E	L
Query Conservation																																																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	V	L	V	A	N	K	T	Q	V	R	.	.	.	.	.	.	L	D	M	A	Q	D	W	A	T	T	N	T	L	D	F	F	D	V	S	A	A	D	A	P	F	L	S	I	A	T	T	F	Y	R	N	Y	E	D	K	V	A	A	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.												T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
																	130	.	.	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions