Job Description P0ABU2 Confidence 100.00% Date Thu Jan 5 11:16:24 GMT 2012 Rank 5 Aligned Residues 316 % Identity 22% Template c1wxqA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3 Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	C	G	I	V	G	L	P	N	V	G	K	S	T	L	F	N	A	L	T	K	A	G	I	E	A	A	N	F	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	Q	L	A	E	I	V	K	P	Q	R	T	L	P	T	T	M	E	F	V	D	I	A	G	L	V	K	G	A	S	K	G
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		E	I	G	V	V	G	K	P	N	V	G	K	S	T	F	F	S	A	A	T	L	A	N	V	G	V	T	Y	A	I	T	D	H	P	C	K	E	L	G	C	S	P	N	P	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	Y	R	N	G	L	A	L	I	P	.	.	.	.	V
Template Known Secondary structure									T	T	S	S																							S		S	S	S			S				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				T	T						.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																			.	.	50	.	.	.	.	.	.	.	.					.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		E	G	L	G	N	Q	F	L	T	N	I	R	E	T	E	A	I	G	H	V	V	R	C	F	E	N	D	N	I	I	.	H	V	S	G	K	V	N	P	A	D	D	I	E	V	I	N	T	E	L	A	L	A	D	L	D	T	C	E	R	A	I	H	R	V	Q	K	K	A	K	G	G	D	K	D	A	K	A	E	L
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		K	X	V	D	V	A	F	L	D	D	L	R	X	A	S	A	L	I	H	V	V	D	A	T	G	K	T	D	P	E	G	Q	P	T	D	Y	H	D	P	V	E	D	I	E	F	L	E	R	E	I	D	Y	W	I	Y	G	I	L	S	K	G	W	D	K	F	A	K	R	I	K	L	Q	K	I	K	L	E	S	A	I
Template Known Secondary structure											S	S	T	T		S								T	T			B		T	T	S		B		S																									T	T	T					S	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		163										.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	V	L	E	K	C	L	P	Q	L	E	N	A	G	M	L	R	A	L	D	L	S	A	E	E	K	A	A	I	R	Y	L	S	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	E	N	N	P	Y	L	D	Q	V	R	E	I	A	A	K	E	G	S	V	V
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																																						.	.
Template Conservation																																																																	.	.
Template Sequence		A	E	H	L	S	G	I	G	V	N	E	N	D	V	W	E	A	X	H	K	L	N	L	P	E	D	P	T	K	W	S	Q	D	D	L	L	A	F	A	S	E	I	R	R	V	N	K	P	X	V	I	A	A	N	K	A	D	A	A	S	D	E	Q	.	.	I	K	R	L	V	R	E	E	E	K	R	G	Y	I	V
Template Known Secondary structure					T	G	G	G	T													T	T			S		G	G	G																		S									G	G	G	S					.	.											T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.											.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		V	P	V	C	A	A	V	E	A	D	I	A	E	L	D	D	E	E	R	D	E	F	M	Q	E	L	G	L	.	.	.	.	.	.	.	.	.	.	E	E	P	G	L	N	R	V	I	R	A	G	Y	K	L	L	N	L	Q	T	Y	F	T	A	G	V	K	E	V	.	.	.	.	.	R	A	W	T	I	P	V	G
Query Conservation																														.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		I	P	T	S	A	A	A	E	L	T	L	R	K	A	A	K	A	G	F	I	E	Y	I	P	A	L	X	V	I	K	E	K	V	L	D	R	F	G	S	T	G	V	Q	E	V	I	N	R	V	V	F	D	L	L	K	L	I	P	V	Y	P	V	H	D	E	Q	F	G	N	V	L	P	H	V	F	L	X	K	K	G
Template Known Secondary structure														S		S	S	S					S				T	T							T	S	S	S	S	S		S											T	T	S									S					S		S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	A	P	Q	A	A	G	K	I	H	T	D	F	E	K	G	F	I	R	A	Q	T	I	S	F	E	D	F	I	T	Y	K	G	E	Q	G	A	K	E	A	G	K	M	R	A	E	G	K	D	Y	I	V	K	D	G	D	V	M	N	F	L
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	P	R	D	L	A	F	K	V	H	T	D	L	G	K	G	F	L	Y	A	I	N	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	R	R	V	G	E	D	Y	E	L	Q	F	N	D	I	V	K	I	V
Template Known Secondary structure																		T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	B			T	T					T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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