Job Description P0ABU2 Confidence 100.00% Date Thu Jan 5 11:16:24 GMT 2012 Rank 1 Aligned Residues 359 % Identity 41% Template c1ni3A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ychf gtp-binding protein; PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		M	G	F	K	C	G	I	V	G	L	P	N	V	G	K	S	T	L	F	N	A	L	T	K	A	G	I	.	E	A	A	N	F	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	Q	L	A	E	I	V	K	P	Q	R	T	L	P	T	T	M	E	F	V	D	I	A	G	L	V	K	G
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		N	N	L	K	T	G	I	V	G	X	P	N	V	G	K	S	T	F	F	R	A	I	T	K	S	V	L	G	N	P	A	N	Y	P	Y	A	T	I	D	P	E	E	A	K	V	A	V	P	D	E	R	F	D	W	L	C	E	A	Y	K	P	K	S	R	V	P	A	F	L	T	V	F	D	I	A	G	L	T	K	G
Template Known Secondary structure		S										S	S	S	S											S	T	T	T	S	T	T			S	S					T	T																					S												T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		A	S	K	G	E	G	L	G	N	Q	F	L	T	N	I	R	E	T	E	A	I	G	H	V	V	R	C	F	E	N	D	N	I	I	H	V	S	G	K	V	N	P	A	D	D	I	E	V	I	N	T	E	L	A	L	A	D	L	D	T	C	E	R	A	I	H	R	V	Q	K	K	A	K	G	G	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		A	S	T	G	V	G	L	G	N	A	F	L	S	H	V	R	A	V	D	A	I	Y	Q	V	V	R	A	F	D	D	A	E	I	I	H	V	E	G	D	V	D	P	I	R	D	L	S	I	I	V	D	E	L	L	I	K	D	A	E	F	V	E	K	H	L	E	G	L	R	K	I	T	S	R	G	A	N	T	L	E
Template Known Secondary structure				S	S	S	S	S									T	T		S											T	T		S	S			S	S	S	S																															T	T			S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
			156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																		.																																										.	.																	.	.
Query SS confidence		.																		.																																										.	.																	.	.
Query Sequence		.	K	D	A	K	A	E	L	A	V	L	E	K	C	L	P	Q	L	.	E	N	A	G	M	L	R	A	L	D	L	S	A	E	E	K	A	A	I	R	Y	L	S	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	.	.	E	N	N	P	Y	L	D	Q	V	R	E	I	A	A	K	E	.	.
Query Conservation		.																		.																																										.	.																	.	.
Alig confidence		.																		.																																										.	.																	.	.
Template Conservation
Template Sequence		X	K	A	K	K	E	E	Q	A	I	I	E	K	V	Y	Q	Y	L	T	E	T	K	Q	P	I	R	K	G	D	W	S	N	R	E	V	E	I	I	N	S	L	Y	L	L	T	A	K	P	V	I	Y	L	V	N	X	S	E	R	D	F	L	R	Q	K	N	K	Y	L	P	K	I	K	K	W	I	D	E	N	S	P
Template Known Secondary structure																					T	T		S		G	G	G	S												T	T			G	G	G	S														T	T	T			S	S										T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	V	V	P	V	C	A	A	V	E	A	D	I	A	E	L	D	D	E	E	R	D	E	F	M	Q	E	L	G	L	E	E	P	G	L	N	R	V	I	R	A	G	Y	K	L	L	N	L	Q	T	Y	F	T	A	G	V	K	E	V	R	A	W	T	I	P	V	G	A	T	A	P	Q	A	A	G	K	I	H
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		G	D	T	L	I	P	X	S	V	A	F	E	E	R	L	T	N	F	T	E	E	E	A	I	E	E	C	K	K	L	N	T	.	K	S	X	L	P	K	I	I	V	T	G	Y	N	A	L	N	L	I	N	Y	F	T	C	G	E	D	E	V	R	S	W	T	I	R	K	G	T	K	A	P	Q	A	A	G	V	I	H
Template Known Secondary structure		T															T	T	S												T	T		.			S												T	T									S	S									T	T		B
Template Predicted Secondary structure																																		.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	F	E	K	G	F	I	R	A	Q	T	I	S	F	E	D	F	I	T	Y	K	G	E	Q	G	A	K	E	A	G	K	M	R	A	E	G	K	D	Y	I	V	K	D	G	D	V	M	N	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	F	E	K	A	F	V	V	G	E	I	X	H	Y	Q	D	L	F	D	Y	K	T	E	N	A	C	R	A	A	G	K	Y	L	T	K	G	K	E	Y	V	X	E	S	G	D	I	A	H	W	K
Template Known Secondary structure							T		S														T	S							T	T		S					T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions