Job Description P0AD37 Confidence 70.35% Date Thu Jan 5 11:19:54 GMT 2012 Rank 39 Aligned Residues 89 % Identity 11% Template d1okra_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor Resolution 2.4

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		1	.	.	.	.	.	.	.	.	10					.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure												.	.	.	.			.	.	.
Query SS confidence												.	.	.	.			.	.	.
Query Sequence		M	T	P	D	E	L	A	R	L	T	.	.	.	.	G	Y	.	.	.	S	R	Q	T	I	N	K	W	V	R	K	E	G	W	T	T	S	P	K	P	G	V	Q	G	G	K	A	R	L	V	H	V	N	E	Q	V	R	E	Y	I	R	N	A	E	R	P	E	G	Q	G	E	A	P	A	L	S	G	D	A	P	L
Query Conservation												.	.	.	.			.	.	.
Alig confidence												.	.	.	.			.	.	.																				.	.	.	.																															.	.	.
Template Conservation																																								.	.	.	.																															.	.	.
Template Sequence		A	S	A	N	N	I	I	E	E	I	Q	M	Q	K	D	W	S	P	K	T	I	R	T	L	I	T	R	L	Y	K	K	G	F	I	D	R	K	K	.	.	.	.	D	N	K	I	F	Q	Y	Y	S	L	V	E	E	S	D	I	K	Y	K	T	S	K	N	F	I	N	K	V	Y	K	.	.	.	G	G	F	N	S
Template Known Secondary structure																																	T	S						.	.	.	.		T	T							S	S																		S	T	.	.	.	T
Template Predicted Secondary structure																																								.	.	.	.																															.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	L	V	T	L	A	K	E	M	T	P	V	E	Q	K	Q	F	T	S	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	N	F	V	E	K	E	D	L	S	Q	D	E	I	E	E	L	R	N	I	L
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions