Job Description P77148 Confidence 99.11% Date Thu Jan 5 12:25:39 GMT 2012 Rank 113 Aligned Residues 168 % Identity 15% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	A	I	V	G	A	G	P	T	G	I	Y	T	L	F	S	L	L	Q	Q	Q	T	P	L	S	I	S	I	F	E	Q	A	D	E	A	G	V	G	M	P	Y	S	D	E	E	N	S	K	M	M	L	A	N	I	A	S	I	E	I	P	P	I	Y	C	T	Y	L	E	W	L	Q	K	Q	E	D	S	H	L
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		D	D	I	A	I	I	G	G	G	I	V	S	A	L	T	A	L	A	L	Q	R	R	.	.	G	A	V	V	T	L	Y	C	A	D	A	Q	P	A	Q	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	N	G	K	N	D	A	L	E	T	F	F	T	S	A	F	T	F	A	R	R	Q	Y	D	Q	L	L	E
Template Known Secondary structure		S	S							S												T	T	.	.	T								S	S	S	S	T	T		S	G	G	G		S										S	S		S
Template Predicted Secondary structure																								.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																																													.	110	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	Y	G	V	K	K	E	T	L	H	D	R	Q	F	L	P	R	I	L	L	G	E	Y	F	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	L	R	L	V	D	Q	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	I	A	F	D	H	Q	W	C	G	V	S	Q	L	A	F	D	D	K	S	R	G	K	I	E	K	X	L	H	T	Q	W	P	V	E	F	A	E	A	X	S	R	E	Q	L	S	E	L	A	G	L	D	C	A	H	D	G	I	H	Y	P	A	G	G	W	L	C	P	S	D	L	T	H	A	L	X	X	L	A
Template Known Secondary structure		T	T																S											T	T	S				T	T	T														S	S			S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Q	K	F	A	V	A	V	Y	E	S	C	Q	V	T	D	L	Q	I	T	N	A	G	V	M	L	A	T	N	Q	D	L	P	S	E	T	F	D	L	A	V	I	A	T	G	H	V	W	P	D	E	E	E	A	T	R
Query Conservation
Alig confidence						.	.																			.
Template Conservation						.	.																			.
Template Sequence		Q	Q	N	G	.	.	X	T	C	H	Y	Q	H	E	L	Q	R	L	K	R	I	D	S	Q	.	W	Q	L	T	F	G	S	Q	A	A	K	H	H	A	T	V	I	L	A	T	G	H	R	L	P	E	W	E	Q	T	H	H
Template Known Secondary structure				T	T	.	.						S										S	S	S	.														S							G	G	G	T	T		S	T	T	T	T	T
Template Predicted Secondary structure						.	.																			.
Template SS confidence
		423	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions