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Job DescriptionP77148
Confidence99.18%DateThu Jan 5 12:25:39 GMT 2012
Rank96Aligned Residues300
% Identity15%Templatec3cgdB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i; PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH
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Template Sequence  MN. YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CGL
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S
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G...................................GG
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   81........90.........100.........110.........120.........130.........140.........150 ........
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Query Sequence  LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL. . PSETFDLA
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Template Sequence  PYVISGAIASTEKLIARNVKTFRDKY. . . . . . . . . . . . . . . . GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRL
Template Known Secondary structure  TTSSS
GGGGBSS
TT................

SSTTTTTTT


S
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   45....50.........60.........70 .........80.........90.........100........
 
   159160.........170.........180.... .....190.........200.........210.........220.........
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Query Sequence  VIATGHVWPDEEEATRTYFPSPWSGL. . . . . . . . . MEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHR
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Template Sequence  LIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELG. . . . . . . . . . . . . . .
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BTTTSBT

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   109110.........120.........130.........140.........150.........160.........170...
 
   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  DNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLN
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Template Sequence  . . . . . . KKVRMIERNDHIGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SSSSSST............................................................
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   174.....180.......
 
   310.........320.........330.........340.........350.........360.........370.........380.........
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Query Sequence  VDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAA
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Template Known Secondary structure  ...............................................................................T
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   188
 
   390.........400.........410.........420.........430.........440.........450.........460.........
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Query Sequence  IPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEI
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Template Sequence  YDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTD. . . . . . . FLEGTNIRTNHK
Template Known Secondary structure  S
TT

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   189190.........200.........210.........220.........230.........240......... 250.........260.
 
   470.........480.........490. ........500.........510 .........520.
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Query Sequence  PDVGEDYTLQQPEDIRGRVAFG. . . ALPWLMHDQPFVQGLTACA. EIGEAMARAVV
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Template Sequence  GAIEVNAYMQ. . TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNML
Template Known Secondary structure  S
B


TTSB..
SSTT
GGGB
BTTT
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T
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   262.......270. ........280.........290.........300.........310.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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