Job Description P77148 Confidence 98.93% Date Thu Jan 5 12:25:39 GMT 2012 Rank 145 Aligned Residues 155 % Identity 15% Template c2aczA_ PDB info PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site Resolution 3.10 Å

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		1	.	.							.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.												.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	K	.	.	.	.	.	.	I	A	I	V	G	A	G	P	T	G	I	Y	T	L	F	S	L	L	Q	Q	Q	T	P	L	S	I	S	I	F	E	Q	A	D	E	A	G	V	G	M	P	Y	S	D	E	.	.	.	.	.	.	.	.	.	.	.	E	N	S	K	M	M	L	A	N	I	A	S	I	E	I	P
Query Conservation					.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																					.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		M	K	L	P	V	R	E	F	D	A	V	V	I	G	A	G	G	A	G	M	R	A	A	L	Q	I	S	Q	S	.	.	G	Q	T	C	A	L	L	S	K	V	F	P	T	R	S	H	T	V	S	A	Q	G	G	I	T	V	A	L	G	N	T	H	E	D	N	W	E	W	H	M	Y	D	T	V	K	G	S	D	Y
Template Known Secondary structure				S		B			B	S							S													T	.	.	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S																T	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	Y	C	T	Y	L	E	W	L	Q	K	Q	E	D	S	H	L	Q	R	Y	G	V	K	K	E	T	L	H	D	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	P	R	I	L	L	G	E	Y	F	R	D	Q	F	L	R	L	V	D	Q	A	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		I	G	D	Q	D	A	I	E	Y	M	C	K	T	G	P	E	A	I	L	E	L	E	H	M	G	L	P	F	S	R	L	D	D	G	R	I	Y	Q	R	P	F	G	G	Q	S	K	N	F	G	G	E	Q	A	A	R	T	A	A	A	A	D	R	T	G	H	A	L	L	H	T	L	Y	Q	Q	N	L	K	.	.	.
Template Known Secondary structure			S																					T	T	T					B		S			S	S					S	S	B						T	T	S	S	S						S	T	T																	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																								.	.	.	.												.	.
Query SS confidence																								.	.	.	.												.	.
Query Sequence		Q	Q	K	F	A	V	A	V	Y	E	S	C	Q	V	T	D	L	Q	I	T	N	A	.	.	.	.	G	V	M	L	A	T	N	Q	D	L	P	.	.	S	E	T	F	D	L	A	V	I	A	T	G
Query Conservation																								.	.	.	.												.	.
Alig confidence		.	.	.																				.	.	.	.												.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	H	T	T	I	F	S	E	W	Y	A	L	D	L	V	K	N	Q	D	G	A	V	V	G	C	T	A	L	C	I	E	T	G	E	V	V	Y	F	K	A	R	A	T	V	L	A	T	G
Template Known Secondary structure		.	.	.	T	T						S										T	T	S										T	T	T								B	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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