Job Description P77148 Confidence 98.97% Date Thu Jan 5 12:25:39 GMT 2012 Rank 139 Aligned Residues 157 % Identity 14% Template c1h83A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase; PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane Resolution 1.9 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.																									.	.	.	.
Query SS confidence																											.																									.	.	.	.
Query Sequence		K	I	A	I	V	G	A	G	P	T	G	I	Y	T	L	F	S	L	L	Q	Q	Q	T	P	L	.	S	I	S	I	F	E	Q	A	D	E	A	G	V	G	M	P	Y	S	D	E	E	N	S	K	.	.	.	.	M	M	L	A	N	I	A	S	I	E	I	P	P	I	Y	C	T	Y	L	E	W	L	Q	K	Q	E
Query Conservation																											.																									.	.	.	.
Alig confidence																							.	.			.																									.	.	.	.
Template Conservation																							.	.
Template Sequence		R	V	I	V	V	G	A	G	M	S	G	I	S	A	A	K	R	L	S	E	A	.	.	G	I	T	D	L	L	I	L	E	A	T	D	H	I	G	G	R	M	H	K	T	N	F	A	G	I	N	V	E	L	G	A	N	W	V	E	G	V	N	G	G	K	M	N	P	I	W	P	I	V	N	S	T	L	K	L	R
Template Known Secondary structure									B													T	.	.	T									S	S	S	S	S	B	T	T	S						T	T					S	S								S	S	S	S			T							T	T	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	H	L	Q	R	Y	G	V	K	K	E	T	L	H	D	R	Q	F	L	P	R	I	L	L	G	E	Y	F	R	D	Q	F	L	R	L	V	D	Q	A	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	R	S	D	F	D	Y	L	A	Q	N	V	Y	K	E	D	G	G	V	Y	D	E	D	Y	V	Q	K	R	I	E	L	A	D	S	V	E	E	M	G	E	K	L	S	A	T	L	H	A	S	G	R	D	D	M	S	I	L	A	M	Q	R	L	N	E	H	Q	P	N	G	P	A	T	P	V	D	M	V	V	D
Template Known Secondary structure								T	T	G	G	G					S	S	S	S	B																										T	S		T	T	S	T	T			B										T	S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
																																																															120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	F	A	V	A	V	Y	E	S	C	Q	V	T	D	L	Q	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	K	F	D	Y	E	F	A	E	P	P	R	V	T	S	L	Q	N	T	V	P	L	A	T	F	S	D	F	G	D	D	V	Y	F	V	A	D	Q	R	G	Y	E	A	V	V	Y	Y	L	A	G	Q	Y	L	K	T	D	D	K	S	G	K	I	V	D	P	R	L	Q	L	N	K	V	V	R	E	I	K	Y	S
Template Known Secondary structure					T					S	S		G	G	G	B	B	S	T	T	T	S	S									S								T	T		T	T									T	T	S		B		T	T	T			B			T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	G	V	M	L	A	T	N	Q	D	L	P	S	E	T	F	D	L	A	V	I	A	T
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		P	G	G	.	V	T	V	K	T	E	D	N	S	V	Y	S	A	D	Y	V	M	V	S	A
Template Known Secondary structure		S	S		.						T	T	S						S						S
Template Predicted Secondary structure					.
Template SS confidence
		244	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions