Job Description P46859 Confidence 99.10% Date Thu Jan 5 12:04:31 GMT 2012 Rank 125 Aligned Residues 166 % Identity 13% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	H	I	Y	V	L	M	G	V	S	G	S	G	K	S	A	V	A	S	E	V	A	H	Q	L	H	A	A	F	L	D	G	D	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	R	R	N	I	E	K	M	A	S	G	E	P	L	N	D	D	D	R	K	P	W	L	Q	A	L	N
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	A	I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	C	E	L	I	S	V	D	S	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	S	Y	S	A	A	E	F	R	A	D	A	L
Template Known Secondary structure										S	T	T	S	S										T	T	S									T	T	T	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		D	A	A	F	A	M	Q	R	T	N	K	V	S	L	I	V	C	S	A	L	K	K	H	Y	R	D	L	L	R	E	G	N	P	N	L	S	F	I	Y	L	K	G	D	F	D	V	I	E	S	R	L	K	A	R	K	G	H	F	F	K	T	Q	M	L	V	T	Q	F	E	T	L	Q	E	P	.	G	A	D	E	T
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	M	L	Y	Y	K	A	L	L	E	G	L	P	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A	R	I	A	Q	R	F	R	Q	M	L	E	Q	G	F	I	A	E	V	E	A	L	H	A	R	S	D	L	H	A	G	L
Template Known Secondary structure										T	T								S														S										S	S																			T										T		T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		150	.	.											.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	L	.	.	.	.	.	.	.	.	.	.	V	V	D	I	D	Q	P	L	E	G	V	V	A	S	T	I	E	V	I	K	K
Query Conservation					.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	I	R	A	V	G	Y	R	Q	V	W	D	Y	L	D	G	K	L	S	Y	A	E	M	T	E	R	G	I	I	A	T	R	Q
Template Known Secondary structure		T	G	G	G	S	T	T									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions