Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.
Sequence		M	R	I	A	K	I	G	V	I	A	L	F	L	F	M	A	L	G	G	I	G	G	V	M	L	A	G	Y	T	F	I	L	R	A	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2lbg chain A Region: 17 - 25 Aligned: 9 Modelled: 9 Confidence: 10.4% Identity: 67% PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles Phyre2 PDB 2axt chain J domain 1 Region: 3 - 21 Aligned: 19 Modelled: 19 Confidence: 9.4% Identity: 32% Fold: Single transmembrane helix Superfamily: Photosystem II reaction center protein J, PsbJ Family: PsbJ-like Phyre2 PDB 1eys chain H domain 2 Region: 1 - 16 Aligned: 16 Modelled: 16 Confidence: 8.1% Identity: 31% Fold: Single transmembrane helix Superfamily: Photosystem II reaction centre subunit H, transmembrane region Family: Photosystem II reaction centre subunit H, transmembrane region Phyre2 PDB 2kmc chain A Region: 20 - 25 Aligned: 6 Modelled: 6 Confidence: 5.9% Identity: 100% PDB header:cell adhesion Chain: A: PDB Molecule:fermitin family homolog 1; PDBTitle: solution structure of the n-terminal domain of kindlin-1 Phyre2 PDB 2lgx chain A Region: 20 - 25 Aligned: 6 Modelled: 6 Confidence: 5.3% Identity: 100% PDB header:cell adhesion Chain: A: PDB Molecule:fermitin family homolog 2; PDBTitle: nmr structure for kindle-2 n-terminus Phyre2 1 c2lbgA_ 2 d2axtj1 3 d1eysh2 4 c2kmcA_ 5 c2lgxA_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2lbgA_ 10.4 67 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 2 d2axtj1 9.4 32 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 3 d1eysh2 8.1 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 4 c2kmcA_ 5.9 100 PDB header:cell adhesion Chain: A: PDB Molecule:fermitin family homolog 1; PDBTitle: solution structure of the n-terminal domain of kindlin-1 5 c2lgxA_ 5.3 100 PDB header:cell adhesion Chain: A: PDB Molecule:fermitin family homolog 2; PDBTitle: nmr structure for kindle-2 n-terminus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0