Job Description P28904 Confidence 98.03% Date Thu Jan 5 11:45:17 GMT 2012 Rank 127 Aligned Residues 229 % Identity 20% Template d1x1na1 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.80

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																						.																										.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.																										.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	P	K	S	F	Q	D	T	T	G	S	G	T	G	D	L	R	G	V	.	I	Q	H	L	D	Y	L	H	K	L	G	V	D	A	I	W	L	T	P	F	Y	V	S	P	Q	.	.	.	.	V	D	N	G	Y	D	V	A	N	Y	T	A	I	D	P	T	Y	G	T	L	D	.	.	.	.	.	.	.	.	.
Query Conservation																						.																										.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																						.																										.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	L	H	P	T	S	F	P	G	P	Y	G	I	G	D	L	G	P	Q	A	F	K	F	L	D	W	L	H	L	A	G	C	S	L	W	Q	V	L	P	L	V	P	P	G	K	R	G	N	E	D	G	S	P	Y	S	G	Q	D	A	N	C	G	N	T	L	L	I	S	L	E	E	L	V	D	D	G	L	L	K
Template Known Secondary structure						G	G	G	S			T	T	S	S			S	S														T										S		B			S	S	S		T	T		T	T	S	B	S		S	S	S			G	G	G	S									T	S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	E	L	P	E	P	L	P	T	D	R	V	N	Y	S	T	I	S	E	I	K	D	P	L	I	T	K	A	A	K	R	L	L	S	S	E	G	E	L	K	D	Q	L	E	N	F	R	R	D	P	N	I	S	S	W	L	E	D	A	A	Y	F	A	A	I	D	N	S	V	N	T	I	S	W	Y	D	W	P	E
Template Known Secondary structure		G	G	G	S							S	B			T	T	T																					S																																			S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
																																			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	E	L	V	T	Q	A	K	S	R	G	I	R	I	I	L	D	M	V	F	.	.	N	H	T	S	T	Q	H	A	W	F	R	E	A	L	N	K	E	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	K	N	R	H	L	A	A	L	E	E	V	Y	Q	S	E	K	D	F	I	D	I	F	I	A	Q	Q	F	L	F	Q	R	Q	W	K	K	V	R	D	Y	A	R	S	K	G	I	S	I	M	G	D	M	P	I	Y	V	G	Y	H	S	A	D	V	W	A	N	K	K	Q	F	L	L	N	R	K	G	F	P	L
Template Known Secondary structure					T	T												S																												T	T									S	S			S	S	S					T		G	G	G	B		B		T	T	S		B	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
					121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	P	Y	R	Q	F	Y	I	W	R	D	G	E	P	E	T	P	P	N	N	W	R	S	K	F	G	G	S	A	W	R	W	H	A	E	S	E	Q	Y	Y	L	H	L	F	A	P	E	Q	A	D	L	N	W	E	N	P	A	V	R	A	E	L	K	K	V	C	E	F	W	A	D	R	G	V	D	G	L
Query Conservation		.	.	.
Alig confidence		.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		I	V	S	G	V	P	P	D	A	F	S	E	T	G	Q	L	W	G	S	P	L	Y	D	W	K	A	M	E	K	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	W	W	V	R	R	I	Q	R	A	T	D	L	.	F	D	E	F
Template Known Secondary structure						B			S	S	S	S	S			B					B		B								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														.		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300																															.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	D	V	V	N	L	I	S	K	D	P	R	F	P	E	D	L	D	G	D	G	R	R	F	Y	T	D	G	P	R	A	H	E	F	L	H	E	M	N	R	D	V	F	T	P	R	G	L	M	T	V	G	E	M	S	S	T	S	L	E	H	C	Q	R	Y	A	A	L	T	G	S	E	L	S	M	T	F	N	F
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		R	I	D	H	F	R	G	F	A	G	F	W	A	V	P	S	E	E	K	I	A	I	L	G	R	W	K	V	G	P	G	K	P	L	F	D	.	.	.	.	A	I	L	Q	A	V	G	K	I	N	I	I	A	E	D	L	G	V	I	T	E	D	V	V	Q	L	R	K	S	I	E	A	P	G	M	A	V	L	Q	F
Template Known Secondary structure					T	G	G	G	G	T							T	T		S	S	S	S	S														.	.	.	.																	S	S												T	T							G	G	G
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		278	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		395	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions