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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank7Aligned Residues469
% Identity48%Templated1uoka2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDF
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Template Sequence  EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDW
Template Known Secondary structure 





GGGT

SSSSSS

TTT







TTTTSS
S
GGG

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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   84.....90.........100.........110....... ..120.........130.........140.........150.........160..
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Query Sequence  DELVTQAKSRGIRIILDMVFNHTSTQHAWFREAL. NKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLH
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Template Sequence  DELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLH
Template Known Secondary structure  TT


SB

TTSTT
TT
TTGGGB


SSSS
SS
BB
TTSSBSTTTT
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   163......170.........180.........190.........200........ .210.........220.........230.......
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Query Sequence  LFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKD. . . . . PRFPEDLDGDGRRFYTDGPRAHEFLHEMN
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Template Sequence  LFSKKQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMN
Template Known Secondary structure  SS
TTS
BB
TTSTT

TTGGGS


TT







SS
B

GGGTTT
TT
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  RDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWN
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Template Sequence  EEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWN
Template Known Secondary structure  TGGGS


TT


GGG
S
S


GGGSTTTT



TSSSS

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   242.......250.........260.........270.........280.........290.........300.........310.........320.
 
   318.320.........330.........340.........350.........360.........370.........380.........390 ......
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Query Sequence  ALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAE. LRNDGR
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Template Sequence  SLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGE
Template Known Secondary structure 
S

TTS

TS
SSTTTSSSTTGGGT





SSGGG


TS

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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   397..400.........410.........420.........430.........440.........450.........460.........470..
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Query Sequence  DADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAIL
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Template Sequence  DIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIV
Template Known Secondary structure 

GGGGTS




SSTTTTS
SS

SS


GGGGTSS
TTS
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   402.......410.........420.........430.........440.........450.........460.........470.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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