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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank8Aligned Residues470
% Identity43%Templated1m53a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  PHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFD
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Template Sequence  PAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFD
Template Known Secondary structure 




GGGT

SSSSSS

TT







TTTTSS
S
GGG

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   45....50.........60.........70.........80.........90.........100.........110.........120....
 
   85....90.........100.........110....... ..120.........130.........140.........150.........160...
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Query Sequence  ELVTQAKSRGIRIILDMVFNHTSTQHAWFREAL. NKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL
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Template Sequence  SLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHY
Template Known Secondary structure  TT


SB

TTS
TT
TTGGGB


SSSS
SS

B
TTSSBS
TTT


S
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   164.....170.........180.........190.........200.........210....... ..220.........230.........240
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Query Sequence  FAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDG. . . DGRRFYTDGPRAHEFLHEMNRDV
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Template Sequence  FARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKV
Template Known Secondary structure  S
TT

BB
TTSTTT

TTGGGSS

TT




TTT

TTT
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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  FTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALF
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Template Sequence  LSRYDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGKYGWNTFF
Template Known Secondary structure  GGGS


TT

GGGT
GGG
S
S

TTTTTTB
SS
TT
B



TTT

B
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   285....290.........300.........310.........320.........330.........340.........350.........360....
 
   321........330......... 340.........350.........360.........370.........380.........390 ........
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Query Sequence  WCNHDQPRIVSRFGDEGEY. RVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAE. LRNDGRDA
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Template Sequence  LDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKVTA
Template Known Secondary structure  S

TTS

S

STTTTSSSSTTTTTT






SGGG


TTTTSS
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   365....370.........380.........390.........400.........410.........420.........430.........440....
 
   399400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  DELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTW
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Template Sequence  TEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVY
Template Known Secondary structure 
GGGG
S



SSSGGGGS
SS

SS


GGGGTS

TTS

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   445....450.........460.........470.........480.........490.........500.........510.........520
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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