Job Description P28904 Confidence 100.00% Date Thu Jan 5 11:45:17 GMT 2012 Rank 8 Aligned Residues 470 % Identity 43% Template d1m53a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 2.20

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	W	W	Q	N	G	V	I	Y	Q	I	Y	P	K	S	F	Q	D	T	T	G	S	G	T	G	D	L	R	G	V	I	Q	H	L	D	Y	L	H	K	L	G	V	D	A	I	W	L	T	P	F	Y	V	S	P	Q	V	D	N	G	Y	D	V	A	N	Y	T	A	I	D	P	T	Y	G	T	L	D	D	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	W	W	K	E	A	V	F	Y	Q	I	Y	P	R	S	F	K	D	T	N	D	D	G	I	G	D	I	R	G	I	I	E	K	L	D	Y	L	K	S	L	G	I	D	A	I	W	I	N	P	H	Y	D	S	P	N	T	D	N	G	Y	D	I	S	N	Y	R	Q	I	M	K	E	Y	G	T	M	E	D	F	D
Template Known Secondary structure															G	G	G	T			S	S	S	S	S	S									T								T															T	T	T	T	S	S		S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	L	V	T	Q	A	K	S	R	G	I	R	I	I	L	D	M	V	F	N	H	T	S	T	Q	H	A	W	F	R	E	A	L	.	N	K	E	S	P	Y	R	Q	F	Y	I	W	R	D	G	E	P	E	T	P	P	N	N	W	R	S	K	F	G	G	S	A	W	R	W	H	A	E	S	E	Q	Y	Y	L	H	L
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		S	L	V	A	E	M	K	K	R	N	M	R	L	M	I	D	V	V	I	N	H	T	S	D	Q	H	P	W	F	I	Q	S	K	S	D	K	N	N	P	Y	R	D	Y	Y	F	W	R	D	G	K	D	N	Q	P	P	N	N	Y	P	S	F	F	G	G	S	A	W	Q	K	D	A	K	S	G	Q	Y	Y	L	H	Y
Template Known Secondary structure										T	T										S	B			T	T	S										T	T		T	T	G	G	G	B						S	S	S	S		S	S			B		T	T	S	S	B	S					T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		F	A	P	E	Q	A	D	L	N	W	E	N	P	A	V	R	A	E	L	K	K	V	C	E	F	W	A	D	R	G	V	D	G	L	R	L	D	V	V	N	L	I	S	K	D	P	R	F	P	E	D	L	D	G	.	.	.	D	G	R	R	F	Y	T	D	G	P	R	A	H	E	F	L	H	E	M	N	R	D	V
Query Conservation																																																								.	.	.
Alig confidence																																																								.	.	.
Template Conservation
Template Sequence		F	A	R	Q	Q	P	D	L	N	W	D	N	P	K	V	R	E	D	L	Y	A	M	L	R	F	W	L	D	K	G	V	S	G	M	R	F	D	T	V	A	T	Y	S	K	I	P	G	F	P	N	L	T	P	E	Q	Q	K	N	F	A	E	Q	Y	T	M	G	P	N	I	H	R	Y	I	Q	E	M	N	R	K	V
Template Known Secondary structure		S		T	T			B	B		T	T	S																T	T	T							T	T	G	G	G	S	S			T	T											T					T	T			T	T												T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	P	R	G	L	M	T	V	G	E	M	S	S	T	S	L	E	H	C	Q	R	Y	A	A	L	T	G	S	E	L	S	M	T	F	N	F	H	H	L	K	V	D	Y	P	G	G	E	K	W	T	L	A	K	P	D	F	V	A	L	K	T	L	F	R	H	W	Q	Q	G	M	H	N	V	A	W	N	A	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	R	Y	D	V	A	T	A	G	E	I	F	G	V	P	L	D	R	S	S	Q	F	F	D	R	R	R	H	E	L	N	M	A	F	M	F	D	L	I	R	L	D	R	D	S	N	E	R	W	R	H	K	S	W	S	L	S	Q	F	R	Q	I	I	S	K	M	D	V	T	V	G	K	Y	G	W	N	T	F	F
Template Known Secondary structure		G	G	G	S									T	T			G	G	G	T						G	G	G		S		S						T	T	T	T	T	T	B		S	S		T	T		B																				T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.
Predicted Secondary structure																					.																																																				.
Query SS confidence																					.																																																				.
Query Sequence		W	C	N	H	D	Q	P	R	I	V	S	R	F	G	D	E	G	E	Y	.	R	V	P	A	A	K	M	L	A	M	V	L	H	G	M	Q	G	T	P	Y	I	Y	Q	G	E	E	I	G	M	T	N	P	H	F	T	R	I	T	D	Y	R	D	V	E	S	L	N	M	F	A	E	.	L	R	N	D	G	R	D	A
Query Conservation																					.																																																				.
Alig confidence																					.																																																				.
Template Conservation
Template Sequence		L	D	N	H	D	N	P	R	A	V	S	H	F	G	D	D	R	P	Q	W	R	E	A	S	A	K	A	L	A	T	I	T	L	T	Q	R	A	T	P	F	I	Y	Q	G	S	E	L	G	M	T	N	Y	P	F	R	Q	L	N	E	F	D	D	I	E	V	K	G	F	W	Q	D	Y	V	Q	S	G	K	V	T	A
Template Known Secondary structure		S			T	T	S								S			S	T	T	T													T	S	S	S	S						T	T	T	T	T	T								S	G	G	G														T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	L	A	I	L	A	S	K	S	R	D	N	S	R	T	P	M	Q	W	S	N	G	D	N	A	G	F	T	A	G	E	P	W	I	G	L	G	D	N	Y	Q	Q	I	N	V	E	A	A	L	A	D	D	S	S	V	F	Y	T	Y	Q	K	L	I	A	L	R	K	Q	E	A	I	L	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	F	L	D	N	V	R	L	T	S	R	D	N	S	R	T	P	F	Q	W	N	D	T	L	N	A	G	F	T	R	G	K	P	W	F	H	I	N	P	N	Y	V	E	I	N	A	E	R	E	E	T	R	E	D	S	V	L	N	Y	Y	K	K	M	I	Q	L	R	H	H	I	P	A	L	V	Y
Template Known Secondary structure													G	G	G	G		S					S	S	S	G	G	G	G	S		S	S			S	S				G	G	G	G	T	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520