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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank100Aligned Residues334
% Identity15%Templated1g94a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.74

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........ 40.........50.........60.. .......70.........80.........90.........100......
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Query Sequence  DLRGVIQHL. DYLHKLGVDAIWLTPFYVSPQVD. . . NGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHT
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Template Sequence  NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY. ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHM
Template Known Secondary structure 
TT




S
BB
SSSGGGGGSBS
S.
S
BTTB
TT

S
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   12.......20.........30.........40.........50..... ....60.........70.........80.........90
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  STQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVC
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Template Sequence  AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTIN. . . . . . . . . . NSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYI
Template Known Secondary structure 
SS
BTTS
BTTB
SS

GGGB



B

..........TT
SBSTT
B
TTS
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   91........100.........110.........120... ......130.........140.........150.........160
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
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Query Sequence  EFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAAL
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Template Sequence  NDLQAIGVKGFRFDASKHVAA. . . . . . . . . . . . . . . . . . . . . . . SDIQSLMAKV. . NGSPVVFQEVIDQGGEAVGAS. . .
Template Known Secondary structure  T

TGGGS
.......................TS..
S





SS

SS
GG...
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   161........170.........180. ........190. ........200.........210..
 
   267..270.........280.........290.........300.........310.........320.........330..... ....340.....
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Query Sequence  TGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGD. EGEYRVPAAK
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Template Sequence  EYLSTGLVTEFKYSTELGNTFRNGSLAWLSN. . . . . . . FGEGWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLYD
Template Known Secondary structure  GGGGGS
S
GGGGGG.......TTGGGT


GGG
S

TTGGGTSS

TTS

GGGT
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   213......220.........230.........240... ......250.........260.........270.........280.....
 
   346...350..... ....360.........370.........380.........390.........400.........410.........420....
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Query Sequence  MLAMVLHGMQ. GTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDN
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Template Sequence  LANVFMLAYPYGYPKVMSSYDFH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GDTDAGGPNVPVHNNG
Template Known Secondary structure  S
SS
B

T.........................................T
TT



SS
STT
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   286...290.........300........ .310.........320....
 
   425....430.........440.........450.........460........
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Query Sequence  AGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQ
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Template Sequence  NLECFASNWKCEHRW. . . . . . . . . . . . . . . . . SYIAGGVDFRNN
Template Known Secondary structure 
BSSSSB

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   325....330......... 340.........350.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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