Return to main results Retrieve Phyre Job Id

Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank23Aligned Residues468
% Identity19%Templatec3faxA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20......... 30.........40.........50........ .
Predicted Secondary structure 

















....











..................
Query SS confidence 



























. . . .




























. . . . . . . . . . . . . . . . . .
Query Sequence  THLPHWWQNGVIYQIYPKSFQDTTGSGT. . . . GDLRGVIQHLDYLHKLGVDAIWLTPFYVS. . . . . . . . . . . . . . . . . . P
Query Conservation     
 
    


 
    
 
      ....

  

   




 


  
 
 

   .................. 
Alig confidence 



























....




























..................
Template Conservation          
 



 


 

           
 
 
  






 



 
 



                      
Template Sequence  IANFKGRQDAVIYEAHVRDFTSDQSLDGKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDN
Template Known Secondary structure 
TT

SGGG



GGG




TTSTT
SS

B
BSS
BTT





S

SSS
Template Predicted Secondary structure 

























































Template SS confidence 















































































   604.....610.........620.........630.........640.........650.........660.........670.........680...
 
   60.........70......... 80.........90.........100.........110.........120.........130.
Predicted Secondary structure 



















........





















Query SS confidence 



















. . . . . . . .



















































Query Sequence  QVDNGYDVANYTAIDPTYGT. . . . . . . . LDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRD
Query Conservation      

   
   

   

........  


 

   
  

 



 
 

                   
      
Alig confidence 



















........



































.......








Template Conservation    




   
 
    


          


 

   
  

 





 


         .......   

   
Template Sequence  NYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDI. . . . . . . EPNYYHFMN
Template Known Secondary structure  S


S
SBS
SSSB
GGG
S
TTSTT


S

S
TTT.......STTTSB
B
Template Predicted Secondary structure 











































.......



Template SS confidence 















































































   686...690.........700.........710.........720.........730.........740......... 750........
 
   132.......140.........150.........160.........170.........180.........190 .........200.........210
Predicted Secondary structure 








































.







Query SS confidence 


























































.



















Query Sequence  GEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA. DRGVDGLRLDVVNLISKDPR
Query Conservation                                         

   
 
          
 .
 





 
          
Alig confidence 


..........................





























.
















...
Template Conservation     ..........................       
 


     

  
 
    

 







 
    
  ...
Template Sequence  EDG. . . . . . . . . . . . . . . . . . . . . . . . . . SPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDA. . .
Template Known Secondary structure  TTS..........................
B
BSSSSB
B
TTSS


TTGGGSB...
Template Predicted Secondary structure 


..........................

























...
Template SS confidence 















































































   759760. ........770.........780.........790.........800.........
 
   211........220.........230.........240.. .......250.........260.........270....... ..280
Predicted Secondary structure 













.




















.........
Query SS confidence 































.


































. . . . . . . . .


Query Sequence  FPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFT. PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNF. . . . . . . . . HHL
Query Conservation                                  .        
                          .........   
Alig confidence  ....................











.


































.........


Template Conservation  ....................              
   
 

 
                           
 
  
  
Template Sequence  . . . . . . . . . . . . . . . . . . . . AAIELAYKEAKAINPNMIMIGEGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSL
Template Known Secondary structure  ....................
TT



S



BTTB


BSSGGGGGG
SS
Template Predicted Secondary structure  ....................






























Template SS confidence 















































































   810.........820.........830.........840.........850.........860.........
 
   281........290.........300......... 310.........320.........330... ......340.......
Predicted Secondary structure 









.....


















........


Query SS confidence 




























. . . . .























. . . . . . . .













Query Sequence  KVDYPGGEKWTLAKPDFVALKTLFRHWQQ. . . . . GMHNVAWNALFWCNHDQPRIVSRF. . . . . . . . GDEGEYRVPAAKML
Query Conservation                     
         .....             


        ........              
Alig confidence 




























.....























........













Template Conservation                                        
   
 

 


   
 
                   
 


Template Sequence  KSGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFEADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLG
Template Known Secondary structure 

TTSTT


TTTT

TT

TTS

SSGGG
S

SSSS
T

TTTT
Template Predicted Secondary structure 































Template SS confidence 















































































   870.........880.........890.........900.........910.........920.........930.........940.........
 
   348.350.........360.........370.........380.........390.........400.........410.........420.......
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  AMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGF
Query Conservation          
 
 

 
 
 
                                              
 
  
        
Alig confidence 
















































.......................







Template Conservation   




 



 

 


 
 
                           .......................        
Template Sequence  NVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVSDKLPNKATLIEAVK. . . . . . . . . . . . . . . . . . . . . . . EYPYFIHD
Template Known Secondary structure  TSSSTTTTTT


B


GGGSS






TT
SS

.......................SS
S
Template Predicted Secondary structure 


































.......................







Template SS confidence 















































































   950.........960.........970.........980.........990........ .1000......
 
   428.430.........440.........450.........460.........470.........480. ........490...
Predicted Secondary structure 























..............




Query SS confidence 





















































. . . . . . . . . . . . . .











Query Sequence  TAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDLL. . . . . . . . . . . . . . PNSPVLWCYRRE
Query Conservation                      
             
  

     
  
      ..............     
 
  
 
Alig confidence 





















































..............











Template Conservation 
       
  

              
    
 

 


  


  
    
                    
 
  
 
Template Sequence  SYDSSDAINHFDWAAATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAEIDREVSLITEVGQGDIKEKDLVIAYQTI
Template Known Secondary structure  GGG





TTT
T
TTSS



SS
TTSTT

SS
Template Predicted Secondary structure 







































Template SS confidence 















































































   1008.1010.........1020.........1030.........1040.........1050.........1060.........1070.........1080.......
 
   494.....500.........510...... ...520.........530... ......540........
Predicted Secondary structure 










...











..........





Query SS confidence 






















. . .
















. . . . . . . . . .














Query Sequence  WKGQTLLVIANLSREIQPWQAGQ. . . MRGNWQLVMHNYEEASP. . . . . . . . . . QPCAMNLRPFEAVWW
Query Conservation        


 
         
  ...                 ..........      
 
     
Alig confidence 






















...
















..........














Template Conservation        


 
 
       
            
 
        
            
 
 
 

 

Template Sequence  DSGDIYAVFVNADSKARNVLLGEKYKHLLKGQVIVDADQAGIKPISTPRGVHFEKDSLLIDPLTAIVI
Template Known Secondary structure 




SSS

GGGGGS
SS
BSSS

SS
SS
SS
TT
Template Predicted Secondary structure 







































Template SS confidence 



































































   1088.1090.........1100.........1110.........1120.........1130.........1140.........1150.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions