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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank4Aligned Residues549
% Identity35%Templatec3a47A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
Resolution1.59 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  HLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDD
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Template Sequence  TEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNED
Template Known Secondary structure  GS




GGGS

SSSSSS

TT
S





TTTTSS
S
TTT

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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   83......90.........100.........110....... ..120.........130...... ...140.........150.....
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Query Sequence  FDELVTQAKSRGIRIILDMVFNHTSTQHAWFREAL. NKESPYRQFYIWRDGEPET. . . . . . PPNNWRSKFGGSAWRWHAE
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Template Sequence  CFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEK
Template Known Secondary structure  TT


SB

TTSTT
SSSTTGGGB


S
TTS

SS
BB
TTSSBSTT
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   90.........100.........110.........120.........130.........140.........150.........160.........
 
   156...160.........170.........180.........190 .........200.........210..... ....220.......
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Query Sequence  SEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA. DRGVDGLRLDVVNLISKDPRFPEDL. . . . . . . DGDGRRFYTDGP
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Template Sequence  TQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTLNGP
Template Known Secondary structure  TT
SSSTT

BB
TT
TTT

TTGGGS


TT







TT
SSB

SS
T
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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   228.230.........240.. .......250.........260.........270.........280.........290.........300...
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Query Sequence  RAHEFLHEMNRDVFT. . . . PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTL
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Template Sequence  RIHEFHQEMNQFIRNRVKDGREIMTVGEMQHASDETKRLYTSASRHELSELFNFSHTDVGTSPLFRYNLVPFELKDWKIA
Template Known Secondary structure  T
SS







GGG
S
S
TTTT



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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   304.....310. ........320.........330.... .....340.........350.........360.........370.........380.
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Query Sequence  FRHWQQGM. HNVAWNALFWCNHDQPRIVSRFG. DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRD
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Template Sequence  LAELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEKYED
Template Known Secondary structure  TTTGGGTTSS



S

TTS

S

STTTT
SSTTGGGT




S

GGG


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   330.........340.........350.........360.........370.........380.........390.........400.........
 
   382.......390... ......400.........410.........420... ......430......... 440.........450...
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Query Sequence  VESLNMFAELRN. . . . DGRDADELLAILASKSRDNSRTPMQWSNGD. NAGFTAGEPWIGLGDN. . . YQQINVEAALADDS
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Template Sequence  VEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPWFYLNDSFREGINVEDEIKDPN
Template Known Secondary structure 
SSS
GGGGTS






TTTTTSS
TT


SS


GGGGGT
S
TT
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   410.........420.........430.........440.........450.........460.........470.........480.........
 
   454.....460.........470...... ...480.........490.........500.........510.........520.........530.
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Query Sequence  SVFYTYQKLIALRKQEAILTWGN. . YQDLLPNSPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYEEA
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Template Sequence  SVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDDSSFKLEFGNYPKK
Template Known Secondary structure  STTS
STT
SSTT
SSS



TT

TT
SS
GG
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   490.........500.........510.........520.........530.........540.........550.........560.........
 
   532.......540.........550.
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Query Sequence  SPQPCAMNLRPFEAVWWLQK
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Template Sequence  EVDASSRTLKPWEGRIYISE
Template Known Secondary structure  G

TT


TT

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   570.........580.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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