Job Description P28904 Confidence 100.00% Date Thu Jan 5 11:45:17 GMT 2012 Rank 4 Aligned Residues 549 % Identity 35% Template c3a47A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae Resolution 1.59 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	P	H	W	W	Q	N	G	V	I	Y	Q	I	Y	P	K	S	F	Q	D	T	T	G	S	G	T	G	D	L	R	G	V	I	Q	H	L	D	Y	L	H	K	L	G	V	D	A	I	W	L	T	P	F	Y	V	S	P	Q	V	D	N	G	Y	D	V	A	N	Y	T	A	I	D	P	T	Y	G	T	L	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	P	K	W	W	K	E	A	T	F	Y	Q	I	Y	P	A	S	F	K	D	S	N	D	D	G	W	G	D	M	K	G	I	A	S	K	L	E	Y	I	K	E	L	G	A	D	A	I	W	I	S	P	F	Y	D	S	P	Q	D	D	M	G	Y	D	I	A	N	Y	E	K	V	W	P	T	Y	G	T	N	E	D
Template Known Secondary structure		G	S														G	G	G	S			S	S	S	S	S	S									T								T		S													T	T	T	T	S	S		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																					.																				.	.	.	.	.	.
Query SS confidence																																					.																				.	.	.	.	.	.
Query Sequence		F	D	E	L	V	T	Q	A	K	S	R	G	I	R	I	I	L	D	M	V	F	N	H	T	S	T	Q	H	A	W	F	R	E	A	L	.	N	K	E	S	P	Y	R	Q	F	Y	I	W	R	D	G	E	P	E	T	.	.	.	.	.	.	P	P	N	N	W	R	S	K	F	G	G	S	A	W	R	W	H	A	E
Query Conservation																																					.																				.	.	.	.	.	.
Alig confidence																																					.																				.	.	.	.	.	.
Template Conservation
Template Sequence		C	F	A	L	I	E	K	T	H	K	L	G	M	K	F	I	T	D	L	V	I	N	H	C	S	S	E	H	E	W	F	K	E	S	R	S	S	K	T	N	P	K	R	D	W	F	F	W	R	P	P	K	G	Y	D	A	E	G	K	P	I	P	P	N	N	W	K	S	Y	F	G	G	S	A	W	T	F	D	E	K
Template Known Secondary structure												T	T										S	B			T	T	S							T	T		S	S	S	T	T	G	G	G	B						S				T	T	S					S	S		B	B		T	T	S	S	B	S					T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																										.	.	.	.	.	.	.
Query SS confidence																																					.																										.	.	.	.	.	.	.
Query Sequence		S	E	Q	Y	Y	L	H	L	F	A	P	E	Q	A	D	L	N	W	E	N	P	A	V	R	A	E	L	K	K	V	C	E	F	W	A	.	D	R	G	V	D	G	L	R	L	D	V	V	N	L	I	S	K	D	P	R	F	P	E	D	L	.	.	.	.	.	.	.	D	G	D	G	R	R	F	Y	T	D	G	P
Query Conservation																																					.																										.	.	.	.	.	.	.
Alig confidence																																					.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	E	F	Y	L	R	L	F	C	S	T	Q	P	D	L	N	W	E	N	E	D	C	R	K	A	I	Y	E	S	A	V	G	Y	W	L	D	H	G	V	D	G	F	R	I	D	V	G	S	L	Y	S	K	V	V	G	L	P	D	A	P	V	V	D	K	N	S	T	W	Q	S	S	D	P	Y	T	L	N	G	P
Template Known Secondary structure		T	T						S	S	S	T	T			B	B		T	T													T						T	T							T	T	G	G	G	S				T	T									T	T		S	S	B							S	S		T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		R	A	H	E	F	L	H	E	M	N	R	D	V	F	T	.	.	.	.	P	R	G	L	M	T	V	G	E	M	S	S	T	S	L	E	H	C	Q	R	Y	A	A	L	T	G	S	E	L	S	M	T	F	N	F	H	H	L	K	V	D	Y	P	G	G	E	K	W	T	L	A	K	P	D	F	V	A	L	K	T	L
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		R	I	H	E	F	H	Q	E	M	N	Q	F	I	R	N	R	V	K	D	G	R	E	I	M	T	V	G	E	M	Q	H	A	S	D	E	T	K	R	L	Y	T	S	A	S	R	H	E	L	S	E	L	F	N	F	S	H	T	D	V	G	T	S	P	L	F	R	Y	N	L	V	P	F	E	L	K	D	W	K	I	A
Template Known Secondary structure		T																	S	S																								G	G	G		S		S										T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure										.																								.
Query SS confidence										.																								.
Query Sequence		F	R	H	W	Q	Q	G	M	.	H	N	V	A	W	N	A	L	F	W	C	N	H	D	Q	P	R	I	V	S	R	F	G	.	D	E	G	E	Y	R	V	P	A	A	K	M	L	A	M	V	L	H	G	M	Q	G	T	P	Y	I	Y	Q	G	E	E	I	G	M	T	N	P	H	F	T	R	I	T	D	Y	R	D
Query Conservation										.																								.
Alig confidence										.																								.
Template Conservation
Template Sequence		L	A	E	L	F	R	Y	I	N	G	T	D	C	W	S	T	I	Y	L	E	N	H	D	Q	P	R	S	I	T	R	F	G	D	D	S	P	K	N	R	V	I	S	G	K	L	L	S	V	L	L	S	A	L	T	G	T	L	Y	V	Y	Q	G	Q	E	L	G	Q	I	N	F	K	N	W	P	V	E	K	Y	E	D
Template Known Secondary structure				T	T	T	G	G	G	T	T	S	S							S			T	T	S								S			S	T	T	T														T		S	S						T	T	G	G	G	T						S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.				440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure														.	.	.	.																															.																	.	.	.
Query SS confidence														.	.	.	.																															.																	.	.	.
Query Sequence		V	E	S	L	N	M	F	A	E	L	R	N	.	.	.	.	D	G	R	D	A	D	E	L	L	A	I	L	A	S	K	S	R	D	N	S	R	T	P	M	Q	W	S	N	G	D	.	N	A	G	F	T	A	G	E	P	W	I	G	L	G	D	N	.	.	.	Y	Q	Q	I	N	V	E	A	A	L	A	D	D	S
Query Conservation														.	.	.	.																															.																	.	.	.
Alig confidence														.	.	.	.																															.																	.	.	.
Template Conservation
Template Sequence		V	E	I	R	N	N	Y	N	A	I	K	E	E	H	G	E	N	S	E	E	M	K	K	F	L	E	A	I	A	L	I	S	R	D	H	A	R	T	P	M	Q	W	S	R	E	E	P	N	A	G	F	S	G	P	S	A	K	P	W	F	Y	L	N	D	S	F	R	E	G	I	N	V	E	D	E	I	K	D	P	N
Template Known Secondary structure																	S	S	S															G	G	G	G	T	S								T	T	T	T	T	S	S		T	T				S	S				G	G	G	G	G	T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		S	V	F	Y	T	Y	Q	K	L	I	A	L	R	K	Q	E	A	I	L	T	W	G	N	.	.	Y	Q	D	L	L	P	N	S	P	V	L	W	C	Y	R	R	E	W	K	G	Q	T	L	L	V	I	A	N	L	S	R	E	I	Q	P	W	Q	A	G	Q	M	R	G	N	W	Q	L	V	M	H	N	Y	E	E	A
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		S	V	L	N	F	W	K	E	A	L	K	F	R	K	A	H	K	D	I	T	V	Y	G	Y	D	F	E	F	I	D	L	D	N	K	K	L	F	S	F	T	K	K	Y	N	N	K	T	L	F	A	A	L	N	F	S	S	D	A	T	D	F	K	I	P	N	D	D	S	S	F	K	L	E	F	G	N	Y	P	K	K
Template Known Secondary structure		S															T					T	S								S	T	T		S	S									T	T										S	S	S							T	T			T	T							S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	P	C	A	M	N	L	R	P	F	E	A	V	W	W	L	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	D	A	S	S	R	T	L	K	P	W	E	G	R	I	Y	I	S	E
Template Known Secondary structure		G			T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.