Job Description P28904 Confidence 96.51% Date Thu Jan 5 11:45:17 GMT 2012 Rank 185 Aligned Residues 128 % Identity 20% Template c2ylaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis Resolution 2.70 Å

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		13	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	Q	I	Y	P	K	S	.	F	Q	D	T	T	G	S	G	T	G	D	L	R	G	V	I	Q	H	L	D	Y	L	H	K	L	G	V	D	A	I	W	L	T	P	F	Y	V	S	P	Q	V	D	N	G	Y	D	V	A	N	Y	T	A	I	D	P	T	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.			.	.	.	.	.	.	.	.																							.	.						.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																							.	.						.	.
Template Sequence		V	I	S	I	D	A	G	R	K	Y	F	.	.	.	.	.	.	.	.	T	L	N	Q	L	K	R	I	V	D	K	A	S	E	L	G	Y	S	D	V	H	L	.	.	L	L	G	N	D	.	.	G	L	R	F	L	L	D	D	M	T	I	T	A	N	G	K	T	Y	A	S	D	D	V	K	K	A	I	I	E	G
Template Known Secondary structure							T	T	T	S			.	.	.	.	.	.	.	.																T							.	.				S	S	.	.	S	B					S							T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																							.	.						.	.
Template SS confidence
		634	.	.	.	.	.	640	.	.	.	.									.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.			.	.	.	670	.			.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
															79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	D	F	D	E	L	V	T	Q	A	K	S	R	G	I	R	I	I	.	.	L	D	M	V	F	N	H	T	S	T	Q	H	A	W	F	R	E	A	L	N	K	E	S	P	Y	R	Q	F	Y	I	W	R	D	G	E	P	E	T	P	P	N	N	W	R	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	A	Y	Y	D	D	P	N	G	T	A	L	T	Q	A	E	V	T	E	L	I	E	Y	A	K	S	K	D	I	G	L	I	P	A	I	N	S	.	P	G	H	M	D	A	M	L	V	A	M	E	K	L	G	I	K	N	P	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T		S																T	T	T										.	S	S	S											T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	G	G	S	A	W	R	W	H	A	E	S	E	Q	Y	Y	L	H	L	F	A	P	E	Q	A	D	L	N	W	E	N	P	A	V	R	A	E	L	K	K	V	C	E	F	W	A	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	D	K	V	S	K	T	T	M	D	L	K	N	E	E	A	M	N	F	V	K	A	L	I	G	K	Y	M	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions