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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank69Aligned Residues377
% Identity20%Templatec2qpuB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alpha-amylase type a isozyme; PDBTitle: sugar tongs mutant s378p in complex with acarbose
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.. .......30.........40.........50.........60.........70..... ....80.........90..
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Query Sequence  QIYPKSFQ. DTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP. TYGTLDDFDELVTQAKS
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Template Sequence  QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHS. VSNEGYMPGRLYDIDASKYGNAAELKSLIGALHG
Template Known Secondary structure 




TTGGG
TT
GGGTT




S
B.SSTTS
SB

TT
GGG
SS

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   2.......10.........20.........30.........40...... ...50.........60.........70.........80
 
   93......100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  RGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLN
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Template Sequence  KGVQAIADIVINHRCADYKDSRG. . . . . . . . . IYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDID
Template Known Secondary structure  TT


SB


S
TTS.........



SSSS
TT


GGGB
TT
TTT

S
S


SS


TTS
BB
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   81........90.........100... ......110.........120.........130.........140.........150.
 
   173......180.........190 .........200.........210.........220.........230.........240.........250.
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Query Sequence  WENPAVRAELKKVCEFWA. DRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGE
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Template Sequence  HLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGYSP. . . . . . . . . . . . . . . . . . . . . . . EMAKVYIDGT. . . SPSLAVAE
Template Known Secondary structure  TTSTT


TTGGGS
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S

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   152.......160.........170.........180....... ..190....... ..200.....
 
   252.......260..... ....270.........280.........290.........300.........310....
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Query Sequence  MSSTSLEHCQRYAA. . . . . . . . . . . . . . . . . LTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNV
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Template Sequence  VWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQG. . . . . KAPGVMGWWP
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B
TTS
B
S

TGGGSS
TTT
GGGSS
TTS.....S
SSGGGT
G
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   206...210.........220.........230.........240.........250.........260.........270 .........280
 
   315....320.........330.........340.........350.........360.........370.........380.........390....
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Query Sequence  AWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRND
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Template Sequence  AKAVTFVDNHDTGSTQAMWPF. . . . PSDKVMQGYAYILTHPGIPCIFYDHFFNWG. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGS

TTTSTTT
SS

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GGGTTSSSTSS.........................
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   281........290.........300. ........310.........320.........330.
 
   395....400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  GRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTW
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FKDQIAALVAIRKRNGITAT
Template Known Secondary structure  ............................................................
TT

TT
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   332.......340.........350.
 
   475....480.........490.........500.........510.........520.........
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Query Sequence  GNYQDLLPNSPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYE
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Template Sequence  SALKILMHEG. DAYVAEI. . . DGKVVVKIGPRYDVG. . . . AVIPAGFVTSAHGND
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T.T...TTTSS



G....GGS
TT
TT
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   352.......360. ....... .370.........380... ......390........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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