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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank75Aligned Residues422
% Identity20%Templatec1ud8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40.........50.........60. ........70. ........80..
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Query Sequence  IYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQV. DNGYDVANYT. . . . . . . . . AIDPTYGTLDD
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Template Sequence  LNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQ
Template Known Secondary structure 






TT

SSS
T




SSSTT

SSSTT
SS
S
BTTBSS
SS

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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.........120.........130...
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Query Sequence  FDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGE. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNG
Template Known Secondary structure  TT


S


STT
S

B

GGGTTSS



B
GGG
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   134.....140.........150.........160.........170.........180.........190 .........200.........
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Query Sequence  . . . PETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA. DRGVDGLRLDVVNLISKDP
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Template Sequence  VDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLL. . GSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPF. .
Template Known Secondary structure  TTTTTT



SS


TTS




S..S
TTST
STTTTSS
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   163......170.........180.........190....... ..200.........210.........220.........230........
 
   210.........220.........230.........240.. .......250.........260.........270.........280.......
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Query Sequence  RFPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFT. . PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . WYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLD. EMNWEMSLFDVPLNYNFYRAS
Template Known Secondary structure  .....................
SS





S
.TS
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   239240.........250.........260.........270..... ....280.........290......
 
   288.290.........300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  EKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIG
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Template Sequence  QQGGSYD. . . . . MRNILRGSLVEAHPMHA. VTFVDNHDTQPGESLESWVADWFKPL. . AYATILTREGGYPNVFYGDYYG
Template Known Secondary structure 
SSS
.....GGGSSTT

TTS.
BS

TTTSTTSTT




TTT..SSSS

T
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   297..300... ......310.........320 .........330.........340...... ...350.........360........
 
   368.370.........380.........390.........400.........410.........420.........430.........440.......
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Query Sequence  MTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEA
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Template Sequence  IPNDNISA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  BGGGTB

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   369370......
 
   448.450.........460.........470.........480.........490........ .500.........510....... ..520
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Query Sequence  ALADDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQT. . . . . LLVIANLSREIQPWQAGQM. . RGN
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Template Sequence  . . . . . . . KKDMIDELLDARQNYAY. . . GTQHDYFDHW. DVVGWTREGSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQT
Template Known Secondary structure  .......
T

...S
TTSS.S


TTSTT

SSS


GGGTT
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   377..380.........390... ......400... ......410.........420.........430.........440.....
 
   521........ 530.........540.........550.
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Query Sequence  WQLVMHNYE. . . . EASPQPCAMNLRPFEAVWWLQK
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Template Sequence  WTDLTGNNGASVTINGDGWGEFFTNGGSVSVYVNQ
Template Known Secondary structure  TTSS




TTS
TT

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   446...450.........460.........470.........480
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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