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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank82Aligned Residues410
% Identity16%Templatec1jd7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GDLRGVIQHL. DYLHKLGVDAIWLTPFYVSPQVD. . . NGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNH
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Template Sequence  WNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY. ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINH
Template Known Secondary structure 

TT




S
BB
SSSGGGGGSBS
S.SS
BTTB
TT

S
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   11........20.........30.........40.........50..... ....60.........70.........80.........
 
   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  TSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKV
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Template Sequence  MAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNSDYGND. . . . . . . . . . RYRVQNCELVGLADLDTASNYVQNTIAAY
Template Known Secondary structure 
SS
BTTS
BTTB
SS

GGGB



B


..........SBBTTBB
TTS
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   90.........100.........110.........120.........130 .........140.........150.........
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  CEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAA
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Template Sequence  INDLQAIGVKGFRFDASKHVAA. . . . . . . . . . . . . . . . . . . . . . . SDIQSLMAKV. . NGSPVVFQEVIDQGGEAVGASEY
Template Known Secondary structure  T

TGGGS
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S






SS
SS
GGGG
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   160.........170.........180. ........190. ........200.........210....
 
   266...270.........280.........290.........300.........310.........320.........330.........340 ....
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Query Sequence  LTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYR. VPAA
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Template Sequence  LS. . . TGLVTEFKYSTELGNTFRNGSLAWLSN. . . . . . . FGEGWGFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDGRLY
Template Known Secondary structure  TT...TS
S
GGGGGG.......
SGGGT


GGG
S

TTGGGTSS

TTS

GGGT
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   215. ...220.........230.........240... ......250.........260.........270.........280....
 
   345....350..... ....360.........370.........380.........390.........400.........410.........420...
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Query Sequence  KMLAMVLHGMQ. GTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGD
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Template Sequence  DLANVFMLAYPYGYPRVMSSYDFHGDT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

S
B

TT
T.....................................................
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   285....290.........300.........310.
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
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Query Sequence  NAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIA
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Template Sequence  . . . . . DAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVDFRN. NTADNWAVTNWWDNTN. NQISFGR. . . GSSGHMAI
Template Known Secondary structure  .....T



SS
STT
BSSSSB

GGGS.TTTT




SS.S
...GGG
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   312.......320.........330.........340.........350 .........360...... ...370... ......380.
 
   504.....510 .........520......... 530.........540........
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Query Sequence  NLSREIQ. . PWQAGQMRGNWQLVMHNYE. . . . . . . . . . . . . EASPQPCAMNLRPFEAVWW
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Template Sequence  NKEDSTLTATVQTDMASGQYCNVLKGELSADAKSCSGEVITVNSDGTINLNIGAWDAMAI
Template Known Secondary structure 
SSS
B



S
S
TTT

B
TTSS
BSS

TTS

B
TT
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   382.......390.........400.........410.........420.........430.........440.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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