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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank80Aligned Residues413
% Identity17%Templatec1jaeA_
PDB info PDB header:glycosidaseChain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........ 40.........50.........60.. .......70.........80.........90.........100....
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Query Sequence  DLRGVIQHL. DYLHKLGVDAIWLTPFYVSPQVD. . . . . NGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFN
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Template Sequence  KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYI. INTRSGDESAFTDMTRRCNDAGVRIYVDAVIN
Template Known Secondary structure 
TTTTTT



S
BB

TT

GGGGGSB

S
.STTTT


S
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   20.........30.........40.........50.........60...... ...70.........80.........90........
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  HTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKK
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Template Sequence  HMTGMNGVGTSGSSADHDGMNY. . . . . PAVPYGSGDFHSPCEVNNY. . . . QDADNVRNCELVGLRDLNQGSDYVRGVLID
Template Known Secondary structure  B

SS
BTTS
BTTTTBB.....TTTTB
GGGB



B


T....T
SBBTTB
BB
TTS
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   99100.........110.........120 .........130......... 140.........150.........160.........
 
   185....190.........200.........210.........220.........230.........240 .........250.....
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Query Sequence  VCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDV. . . . . . . . . FTPRGLMTVGEMSST
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Template Sequence  YMNHMIDLGVAGFRVDAAKHMSP. . . . . . . . . . . . . . . . . . . . . . . GDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDL
Template Known Secondary structure  TT

TTGGGS
.......................T




GGGT

TT






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   170.........180.........190.. .......200.........210.........220......
 
   256...260.........270.........280.........290.........300.........310.........320.........330.....
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Query Sequence  SLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGD
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Template Sequence  GGEAISKNEYTG. . . FGCVLEFQFGVSLGNAFQGGNQLKNLA. . . . . . NWGPEWGLLEGLDAVVFVDNHDNQRTGGSQIL
Template Known Secondary structure  SSSS

GGGTTT...SS
TTTS
GGGGG......G
SGGGT


GGG
S

TTS
TT

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   227..230........ .240.........250.........260..... ....270.........280.........290.......
 
   336...340.........350..... ....360.........370.........380.........390.........400.........410....
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Query Sequence  EGEYRVPAAKMLAMVLHGMQ. GTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSR
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Template Sequence  TYK. NPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IS
Template Known Secondary structure 
TT.SS
SS
B

SSTT



B
TTS
B...............................

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   298.300 .........310.........320.........330.........340... ..
 
   415....420.........430.........440.........450.........460.........470.........480.........490....
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Query Sequence  TPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREW
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Template Sequence  PGINDDNTCSNGYVCEH. . . . . . . . . . . . . . . . . . . . . . . RWRQVYGMVGFRNAVEG. . . TQVENWWSNDDNQIAFSR. .
Template Known Secondary structure 

TTS
TTB

GG.......................GSTTT...


SSS..
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   346...350.........360.. .......370......... 380.........390.......
 
   495....500.........510.........520.........530 .........540.....
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Query Sequence  KGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYEE. . . . . . . . . . . ASPQPCAMNLRPFEA
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Template Sequence  GSQGFVAFTNGGDLNQNLNTGLPAGTYCDVISGELSGGSCTGKSVTVGDNGSADISLGSAED
Template Known Secondary structure  TTTSSS




S
TTT

TTSS

TTS
TTSS
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   398.400.........410.........420.........430.........440.........450.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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