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Job DescriptionP28904
Confidence100.00%DateThu Jan 5 11:45:17 GMT 2012
Rank17Aligned Residues431
% Identity29%Templatec1ea9D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:cyclomaltodextrinase; PDBTitle: cyclomaltodextrinase
Resolution3.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20......... 30.........40.........50.........60...
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Query Sequence  HLPHWWQNGVIYQIYPKSFQDTTGSGT. . . . . . . . . . . . . . . . . . . GDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDN
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Template Sequence  QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKA. TTNH
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TTTTS



GGGT



S
S
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ST
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SSS
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   123......130.........140.........150.........160.........170.........180.........190....... ..200.
 
   64.....70.........80.........90.........100.........110....... ..120.........130.........140.
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Query Sequence  GYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREAL. . NKESPYRQFYIWRDGEPETPPNNW
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Template Sequence  KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL. . . . . . .
Template Known Secondary structure  TTS
S
TTT

TTT



SB

TTSTTT
GGGGGB
BSSSS
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   202.......210.........220.........230.........240.........250.........260.........270....
 
   142.......150.........160.........170.........180.........190 .........200.........210.........220
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Query Sequence  RSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA. DRGVDGLRLDVVNLISKDPRFPEDLDGDGR
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Template Sequence  . . . . . . . . . EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSH. . . . . . . . . . . . .
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SSSS
SB
BSSS
TT
BBB
TTST

TTGGGS
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   275....280.........290.........300.........310.........320.........330..
 
   221........230.........240.. .......250.........260.........270.........280.........290.........
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Query Sequence  RFYTDGPRAHEFLHEMNRDVFT. PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVA
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Template Sequence  . . . . . . . . . . QFWREFRRVVKQANPDAYILGEVWHESSIWLE. . . . . . GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSF
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TT



S

SGGGS......SSS
SS

TTSS

S
TT
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   333......340.........350.........360.... .....370.........380.........390......
 
   300.........310.........320.........330.........340.........350.........360.........370.........
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Query Sequence  LKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDY
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Template Sequence  MLGKQLAGYPRQASE. VMFNLLDSHDTARLLTQADG. . . . DKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPG. . . .
Template Known Secondary structure  S
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SS
TTS

TTS....
SSSTTTTT

S

STTS....
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   397..400.........410. ........420.........430. ........440.........450.........460.......
 
   380.........390.........400.........410.........420.........430.........440.........450.........
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Query Sequence  RDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CRKCMEWD. . . . . . . . . . . . . . . . . . . . . . . . . . . ETKHDKDLFAFY
Template Known Secondary structure  .................................S






...........................TTT

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   468.470..... ....480.......
 
   460.........470.........480... ......490.........500.........510.........520......... 530.......
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Query Sequence  QKLIALRKQEAILTWGNYQDLLPN. SPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYE. EASPQPCA
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Template Sequence  QTVIRLRQAHAALRTGTFKFLTAEKNSRQIAYLREDDQDTILVVMNNDKAGHTLTLPVRHAQWTHLWQDDVLTAAHGQLT
Template Known Secondary structure 
TS
TT

TT



TT






SSS




SSS






SSS
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   488.490.........500.........510.........520.........530.........540.........550.........560.......
 
   538.540........
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Query Sequence  MNLRPFEAVWW
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Template Sequence  VKLPAYGFAVL
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TT


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   568.570........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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