Return to main results Retrieve Phyre Job Id

Job DescriptionP0A763
Confidence100.00%DateWed Jan 25 15:20:17 GMT 2012
Rank17Aligned Residues140
% Identity43%Templated1u8wa_
SCOP infoFerredoxin-like Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA
Query Conservation   
 

 






     
 

  
   

 
   
   

 
 
   
    
   
  

  
 


 


 
 
 

Alig confidence 















































































Template Conservation   
 

 






       

  
   

 
   
   

 
 
   
    
      

  
 


 
 
 
    
Template Sequence  MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV
Template Known Secondary structure 


TT
T



T
TTSSSTTTSS
STT
Template Predicted Secondary structure 























Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   83......90.........100.........110.........120.........130.........140..
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRT
Query Conservation 
   
 
 


 
  
 
 



  
     
 

 

    
 


  

   
     
Alig confidence 



























































Template Conservation 
   
 
 




  
 
 



  
     
 

 

    
 


  

         
Template Sequence  VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQS
Template Known Secondary structure 

SSTTT

TTS

STTS
S
SS
TT






Template Predicted Secondary structure 






















Template SS confidence 



























































   81........90.........100.........110.........120.........130.........140
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions