|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | E | R | T | F | S | I | I | K | P | N | A | V | A | K | N | V | I | G | N | I | F | A | R | F | E | A | A | G | F | K | I | V | G | T | K | M | L | H | L | T | V | E | Q | A | R | G | F | Y | A | E | H | D | G | K | P | F | F | D | G | L | V | E | F | M | T | S | G | P | I | V | V | S | V | L | E | G | E | N |
Query Conservation |   |
  |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|   |
|
Template Sequence |   |
D | V | E | E | T | Y | I | M | V | K | P | D | G | I | Q | R | G | L | V | G | E | I | I | S | R | F | E | K | K | G | F | K | L | I | G | L | K | M | F | Q | C | P | K | E | L | A | E | E | H | Y | K | D | L | S | A | K | S | F | F | P | N | L | I | E | Y | I | T | S | G | P | V | V | C | M | A | W | E | G | V | G |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |
|  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | T | G | G | G | T | T | S | S | S |  |  |  |  |  |  |  |  | T | S | S |
|  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | V | Q | R | H | R | D | L | L | G | A | T | N | P | A | N | A | L | A | G | T | L | R | A | D | Y | A | D | S | L | T | E | N | G | T | H | G | S | D | S | V | E | S | A | A | R | E | I | A | Y | F | F | G | E | G | E | V | C | P | R | T | R |
Query Conservation |   |
|
|   |   |   |
|   |
|   |
|
|
|   |
|   |   |
|   |
|   |
|
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|   |
|
|   |   |   |   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|   |   |
|   |
|   |
|
|
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|
|
|   |
|   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
V | V | A | S | A | R | K | L | I | G | K | T | D | P | L | Q | A | E | P | G | T | I | R | G | D | L | A | V | Q | T | G | R | N | I | V | H | G | S | D | S | P | E | N | G | K | R | E | I | G | L | W | F | K | E | G | E | L | C | K | W | D | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| S | S | T | T | T | S |
| T | T | S |  |  |  |  |  |
|
| B | T | T | B |
|
|  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|
|
|
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . |
  |