 |
Job Description | P0A763 | Confidence | 100.00% | Date | Wed Jan 25 15:20:17 GMT 2012 |
Rank | 28 | Aligned Residues | 133 |
% Identity | 41% | Template | c3b54A_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:nucleoside diphosphate kinase; |
PDBTitle: saccharomyces cerevisiae nucleoside diphosphate kinase
|
Resolution | 3.10 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | T | F | S | I | I | K | P | N | A | V | A | K | N | V | I | G | N | I | F | A | R | F | E | A | A | G | F | K | I | V | G | T | K | M | L | H | L | T | V | E | Q | A | R | G | F | Y | A | E | H | D | G | K | P | F | F | D | G | L | V | E | F | M | T | S | G | P | I | V | V | S | V | L | E | G | E | N | A | V |
Query Conservation |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |   |
| . | . | . | . | . | . | . |   |
|   |   |
|
|   |   |
|
|
|
|
|   |
|   |
|
|
|   |
|   |
|
|
|
Template Sequence |   |
E | R | T | F | I | A | V | K | P | D | G | V | Q | R | G | L | V | S | Q | I | L | S | R | F | E | K | K | G | Y | K | L | V | A | I | K | L | V | K | A | D | D | K | L | L | E | Q | H | Y | . |
. |
. |
. |
. |
. |
. |
A | F | P | K | M | V | S | F | M | K | S | G | P | I | L | A | T | V | W | E | G | K | D | V | V |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  | S | S |
|  |  |  |  |  |  |  | S | T | T |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | R | H | R | D | L | L | G | A | T | N | P | A | N | A | L | A | G | T | L | R | A | D | Y | A | D | S | L | T | E | N | G | T | H | G | S | D | S | V | E | S | A | A | R | E | I | A | Y | F | F | G | E | G | E | V | C | P | R | T | R |
Query Conservation |   |
  |   |   |
|   |
|   |
|
|
|   |
|   |   |
|   |
|   |
|
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|   |
|
|   |   |   |   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |
|
|
|
|
|   |   |
|   |
|   |
|
|
|
|   |
|
|   |   |   |   |   |
|   |
|
|   |
|
|
|   |   |   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
R | Q | G | R | T | I | L | G | A | T | N | P | L | G | S | A | P | G | T | I | R | G | D | F | G | I | D | L | G | R | N | V | C | H | G | S | D | S | V | D | S | A | E | R | E | I | N | L | W | F | K | K | E | E | L | V | D | W | E | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| S | S | G | G | G | S |
| T | T | S |  |  |  |  |  |
|
| B | T | T | B |
| S |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  | S |
| S | T | T |
|
|
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|