Job Description P0A9P0 Confidence 99.24% Date Thu Jan 5 11:10:52 GMT 2012 Rank 204 Aligned Residues 269 % Identity 12% Template c3p1wA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c Resolution 1.85 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T	D	I	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Y	D	V	I	I	L	G	T	G	L	K	E	C	I	L	S	G	L	L	S	H	Y	G	K	K	I	L	V	L	D	R	N	P	Y	Y	G	G	E	T	A	S	L	N	L	T	N	L	Y	N	T	F	K	P	K	E	N	I	P	S	K	Y	G	E	N	R	H	W	N	V	D	L	I	P	K	F	I	L	V	G
Template Known Secondary structure											S													T	T								S	S	S	S	S		G	G	G														T	T	S				G	G	G			G	G	G					S	S			B			T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	S	R	P
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	L	V	K	I	L	K	K	T	R	V	T	N	Y	L	E	W	L	V	V	E	G	S	Y	V	Y	Q	H	Q	K	K	G	F	L	T	S	E	K	F	I	H	K	V	P	A	T	D	M	E	A	L	V	S	P	L	L	S	L	M	E	K	N	R	C	K	N	F	Y	Q	Y	V	S	E	W	D	A	N	K	R
Template Known Secondary structure		S									T	T		G	G	G	S						S												S	S	S											S						T		T	T	S																				T	T		G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.										.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	L	P	F	I	P	H	E	D	P	R	I	W	D	S	T	D	A	L	E	L	K	E	V	P	E	R	L	L	V	M	G	G	G	I	I	.	.	.	.	.	.	.	.	.	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	I	V	K
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	W	D	N	L	D	P	Y	K	L	T	M	L	E	I	Y	K	H	F	N	L	C	Q	L	T	I	D	F	L	G	H	A	V	A	L	Y	L	N	D	D	Y	L	K	Q	P	A	Y	L	T	L	E	R	I	K	L	Y	M	Q	S	I	S	A	F	G	K	S	P	F	I	Y	P	L	Y	G	L	G	G	I	P
Template Known Secondary structure		G	G	S	T	T			T	T	T	S	B								T	T													T	S			S	S	S	G	G	G	G	S	B																			S	S		S					T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	T	K	R	I	S	K	K	F	N	L	M	L	E	T	K	V	T	A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N
Query Conservation
Alig confidence																																.	.
Template Conservation																																.	.
Template Sequence		E	G	F	S	R	M	C	A	I	N	T	F	M	L	N	K	N	V	V	D	F	V	F	D	D	D	N	K	V	C	.	.	G	I	K	S	S	D	G	E	I	A	Y	C	D	K	V	I	C	D	P	S	Y	V	M	H
Template Known Secondary structure															S	S										T	T	S				.	.					T	T	S												G	G	G		T	T
Template Predicted Secondary structure																																.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions