Job Description P0A9P0 Confidence 100.00% Date Thu Jan 5 11:10:52 GMT 2012 Rank 34 Aligned Residues 436 % Identity 21% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	.	.	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T	D	I
Query Conservation																										.	.
Alig confidence																										.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	K	I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	Y	V	S	F	A	N	C	G	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	T	T													S	S								S	S	S		S	S	B		G	G	G						T	S	S	S			G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G	S	R	P	I	Q	L	P	F	I	P	H	E	D	P	R	I	W
Query Conservation
Alig confidence		.	.																																							.	.	.	.	.	.
Template Conservation		.	.																																							.	.	.	.	.	.
Template Sequence		.	.	V	L	Q	T	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E	V	V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	.	.	.	.	.	.	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G	A	A	P	I	V	P	P	I	P	G	V	D	N	P	L	T	H
Template Known Secondary structure		.	.	B																	T	T								T	T	T	T							T	T	.	.	.	.	.	.	T									S																T	T			S	T	T
Template Predicted Secondary structure		.	.																																							.	.	.	.	.	.
Template SS confidence
				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		164	.	.	.	.	.	170	.	.									.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.																																																					.
Query SS confidence											.	.	.	.	.	.	.	.																																																					.
Query Sequence		D	S	T	D	A	L	E	L	K	.	.	.	.	.	.	.	.	E	V	P	E	R	L	L	V	M	G	G	G	I	I	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	I	V	K	V	F	T	K	.	R	I	S	K	K	F	N	L	M	L
Query Conservation											.	.	.	.	.	.	.	.																																																					.
Alig confidence											.	.	.	.	.	.	.	.																																																					.
Template Conservation
Template Sequence		S	L	R	N	I	P	D	X	D	R	I	L	Q	T	I	Q	X	N	N	V	E	H	A	T	V	V	G	G	G	F	I	G	L	E	X	X	E	S	L	H	H	L	G	I	K	T	T	L	L	E	L	A	D	Q	V	X	T	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L
Template Known Secondary structure				S	S														T	T		S								S													T	T								S	S	S	S	S		S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	K	V	T	A	V	E	A	K	E	D	G	I	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E	V	D	D	R	G	F	I	R	V	D	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																																													.	.
Template Sequence		G	T	A	L	S	E	V	S	Y	Q	V	Q	T	H	V	A	S	D	A	A	G	E	D	T	A	H	Q	H	I	K	G	H	L	S	L	T	L	S	N	G	E	L	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	.	.	L	A	R	D	A	G	L	A	I	G	E	L	G	G	I	K	V	N	A
Template Known Secondary structure		S																	T	T	T	T				T	T			T	T								T	T	S						S						S								.	.					T	T			B		T	T	S	S	B				T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.											.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		Q	L	R	T	N	V	P	H	I	F	A	I	G	D	I	V	G	Q	P	.	.	.	.	.	.	.	.	.	.	M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A	G	K	K	H	Y	F	D	P	K	V	I	P	S	.	I	A	Y	T	E	P	E	V	A	W	V	G	L	T	E	K	E	A	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.																																.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																																.
Template Conservation
Template Sequence		X	X	Q	T	S	D	P	A	I	Y	A	V	G	D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P	L	A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X	F	G	R	E	E	R	Y	Q	G	T	Q	G	T	A	I	C	K	V	F	D	L	A	V	G	A	T	G	K	N	E	K	Q	L	K
Template Known Secondary structure		T		B		S	S	T	T					S	T	T	B				B	T	T	T																								T	T								B									T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.
Predicted Secondary structure																																																						.																										.
Query SS confidence																																																						.																										.
Query Sequence		E	K	G	I	S	Y	E	T	A	T	F	P	W	A	A	S	G	R	A	I	A	S	D	C	A	D	G	M	T	K	L	I	F	D	K	E	S	H	R	V	I	G	G	A	I	V	G	T	N	G	G	E	.	L	L	G	E	I	G	L	A	I	E	M	G	C	D	A	E	D	I	A	L	T	I	H	A	H	.	P
Query Conservation																																																						.																										.
Alig confidence																			.																																			.																										.
Template Conservation																			.
Template Sequence		Q	A	G	I	A	F	E	K	V	Y	V	H	T	A	S	H	A	.	S	Y	Y	P	G	A	E	V	V	S	F	K	L	L	F	D	P	V	K	G	T	I	F	G	A	Q	A	V	G	K	D	G	I	D	K	R	I	D	V	X	A	V	A	Q	R	A	G	X	T	V	E	Q	L	Q	H	L	E	L	S	Y	A	P
Template Known Secondary structure			T	T												S	S		.	T	T	S	T	T												T	T	T											S	S	S														T	T							T	T							T
Template Predicted Secondary structure																			.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		447	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		T	L	H	E	.	.	.	S	V	G	L	A	A	E	V	F	E	G	S	I	T	D	L	P	N	P	K	A	K	K
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		P	Y	G	S	A	K	D	V	I	N	Q	A	A	F	V	A	S	N	I	I	K	G	D	A	T	P	I	H	F	D
Template Known Secondary structure		T	T			S	S																T	S			B			T	T
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.