Job Description P0A9P0 Confidence 100.00% Date Thu Jan 5 11:10:52 GMT 2012 Rank 48 Aligned Residues 363 % Identity 19% Template c3kljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	.	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T	D	I	D
Query Conservation																																								.
Alig confidence																																								.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	K	I	L	I	L	G	A	G	P	A	G	F	S	A	A	K	A	A	L	G	K	C	D	D	I	T	M	I	N	S	E	K	Y	L	P	Y	Y	R	P	R	L	N	E	I	I	A	K	N	K	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		B		S							S											T	T	T		S							S	S	S	S			B		G	G	G							S				G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G	S	R	P	I	Q	L	P	F	I	P	H	E	D	P	R	I	W	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	D	D	I	L	I	K	K	N	D	W	Y	E	K	N	N	I	K	V	I	T	S	E	F	A	T	S	I	D	P	N	N	K	L	V	T	L	K	S	G	E	K	I	K	Y	E	K	L	I	I	A	S	G	S	I	A	N	K	I	K	V	P	H	A	D	E	I	F	S	L	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	G	G	T	B	S	S								T	T						S								T	T	T	T					T	T	S						S																T	T		S						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
					164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																							.	.
Query SS confidence		.	.	.																																																							.	.
Query Sequence		.	.	.	D	S	T	D	A	L	E	L	K	E	V	P	E	R	L	L	V	M	G	G	G	I	I	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	.	.	I	V	K	V	F	T	K	R	I	S	K	K	F	N	L	M	L	E	T	K	V
Query Conservation		.	.	.																																																							.	.
Alig confidence		.	.	.																																																							.	.																				.	.
Template Conservation																																																																																.	.
Template Sequence		S	Y	D	D	A	L	K	I	K	D	E	C	K	N	K	G	K	A	F	I	I	G	G	G	I	L	G	I	E	L	A	Q	A	I	I	D	S	G	T	P	A	S	I	G	I	I	L	E	Y	P	L	E	R	Q	L	D	R	D	G	G	L	F	L	K	D	K	L	D	R	L	G	I	K	I	Y	T	N	S	.	.
Template Known Secondary structure		S															S								S														T								S	S	S	S	S		T	T	T	S														T	T	T						S		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E	V	D	D	R	G	F	I	R	V	D	K	Q	L	R	T	N	V	P	H	I	F	A	I	G	D	I	V	G	Q	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	E	E	M	G	D	L	I	R	S	S	C	V	I	T	A	V	G	V	K	P	N	L	D	F	I	K	D	T	E	I	.	.	.	.	A	S	K	R	G	I	L	V	N	D	H	M	E	T	S	I	K	D	I	Y	A	C	G	D	V	A	E	F	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G								S													G	G	G	T	T	S			.	.	.	.		B	S	S	S					T	T		B		S	S	T	T					G	G	G				T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
																	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
					318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.																							.
Query SS confidence		.	.	.																							.
Query Sequence		.	.	.	P	M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A	G	K	K	.	H	Y	F	D	P	K	V	I	P	S	I	A	Y	T	E	P	E	V	A	W	V	G	L	T	E	K	E	A	K	E	K	G	I	S	Y	E	T	A	T	F	P	W	A	A	S	G	R	A	I	A	S	D	C	A
Query Conservation		.	.	.																							.
Alig confidence		.	.	.																							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	N	P	G	L	I	N	I	A	N	K	Q	G	E	V	A	G	L	N	A	C	G	E	D	A	S	Y	S	E	I	I	P	S	P	I	L	K	V	S	G	I	S	I	I	S	C	G	D	I	E	N	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	K	V	F	R	S	T	Q	E
Template Known Secondary structure		T	B																				T	T																	T	T							S			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.																	.	320	.	.	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		D	G	M	T	K	L	I	F	D	K	E	S	H	R	V	I	G	G	A	I	V	G	T	N	G	G	E	L	L	G	E	I	G	L	A	I	E	M	G	C	D	A	E	D	I	A	L	T	I	H	.	A	H	P
Query Conservation																																																				.
Alig confidence										.	.																.	.																								.
Template Conservation										.	.																.	.
Template Sequence		D	K	Y	I	V	C	M	L	.	.	K	E	N	K	I	D	A	A	A	V	I	G	D	V	S	.	.	L	G	T	K	L	K	K	A	I	D	S	S	K	S	F	D	N	I	S	S	L	D	A	I	L	N	N
Template Known Secondary structure		S								.	.		T	T									S				.	.											T	T		B		S			S							T	T
Template Predicted Secondary structure										.	.																.	.
Template SS confidence
		329	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.