Job Description P0A9P0 Confidence 100.00% Date Thu Jan 5 11:10:52 GMT 2012 Rank 7 Aligned Residues 458 % Identity 41% Template c2eq8E_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp Resolution 1.94 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	E	I	K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K
Query Conservation
Alig confidence				.	.	.																																			.																																							.
Template Conservation				.	.	.																																			.																																							.
Template Sequence		M	K	.	.	.	T	Y	D	L	I	V	I	G	T	G	P	G	G	Y	H	A	A	I	R	A	A	Q	L	G	L	K	V	L	A	V	E	A	G	E	.	V	G	G	V	C	L	N	V	G	C	I	P	T	K	A	L	L	H	A	A	E	T	L	H	H	L	K	V	A	E	G	F	G	L	K	A	K	P	.	E
Template Known Secondary structure				.	.	.										S													T	T								S	S		.	T	T						T	S																					G	G	G	T						.
Template Predicted Secondary structure				.	.	.																																			.																																							.
Template SS confidence
		7	.				.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	I	D	K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G	S	R	P	I	Q	L	P	F	I	P	H	E	D	P
Query Conservation
Alig confidence																																																	.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		L	D	L	K	K	L	G	G	W	R	D	Q	V	V	K	K	L	T	G	G	V	G	T	L	L	K	G	N	G	V	E	L	L	R	G	F	A	R	L	V	G	P	K	E	V	E	V	.	.	.	.	G	G	E	R	Y	G	A	K	S	L	I	L	A	T	G	S	E	P	L	E	L	K	G	F	P	F	G	E	D
Template Known Secondary structure																													T	T						S							T	T					.	.	.	.	T	T																			B	T	T	B			S	S	S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		R	I	W	D	S	T	D	A	L	E	L	K	E	V	P	E	R	L	L	V	M	G	G	G	I	I	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	I	V	K	V	F	T	K	.	R	I	S	K	K	F	N	L	M	L	E	T	K	V	T
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		V	W	D	S	T	R	A	L	K	V	E	E	G	L	P	K	R	L	L	V	I	G	G	G	A	V	G	L	E	L	G	Q	V	Y	R	R	L	G	A	E	V	T	L	I	E	Y	M	P	E	I	L	P	Q	G	D	P	E	T	A	A	L	L	R	R	A	L	E	K	E	G	I	R	V	R	T	K	T	K	A	V
Template Known Secondary structure											G	G	G				S								S													T	T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	.	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E	V	D	D	R	G	F	I	R	V	D	K	Q	L	R	T	N	V	P	H	I	F	A	I	G	D	I	V	G	Q	P
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		G	Y	E	K	K	K	D	G	L	H	V	R	L	E	P	A	E	G	G	E	G	E	E	V	V	V	D	K	V	L	V	A	V	G	R	K	P	R	T	E	G	L	G	L	E	K	A	G	V	K	V	D	E	R	G	F	I	R	V	N	A	R	M	E	T	S	V	P	G	V	Y	A	I	G	D	A	A	R	P	P
Template Known Secondary structure							T	T									T	T			S							S						S					S		T	T	S	S					T			B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	T		S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A	G	K	K	H	Y	F	D	P	K	V	I	P	S	I	A	Y	T	E	P	E	V	A	W	V	G	L	T	E	K	E	A	K	E	K	G	I	S	Y	E	T	A	T	F	P	W	A	A	S	G	R	A	I	A	S	D	C	A	D	G	M	T	K
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		L	L	A	H	K	A	M	R	E	G	L	I	A	A	E	N	A	A	G	K	D	S	A	F	D	Y	Q	.	V	P	S	V	V	Y	T	S	P	E	W	A	G	V	G	L	T	E	E	E	A	K	R	A	G	Y	K	V	K	V	G	K	F	P	L	A	A	S	G	R	A	L	T	L	G	G	A	E	G	M	V	K
Template Known Secondary structure																			T	T									.							S	S	S																T										G	G	G							T	S	S
Template Predicted Secondary structure																													.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	F	D	K	E	S	H	R	V	I	G	G	A	I	V	G	T	N	G	G	E	L	L	G	E	I	G	L	A	I	E	M	G	C	D	A	E	D	I	A	L	T	I	H	A	H	P	T	L	H	E	S	V	G	L	A	A	E	V	F	E	G	S	I	T	D	L	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	G	D	E	E	T	D	L	L	L	G	V	F	I	V	G	P	Q	A	G	E	L	I	A	E	A	A	L	A	L	E	M	G	A	T	L	T	D	L	A	L	T	V	H	P	H	P	T	L	S	E	S	L	M	E	A	A	E	A	F	H	K	Q	A	I	H	I	L	N
Template Known Secondary structure						T	T	T		B									T	T														T	T		B						T	S				S	S		T	T											T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.