Job Description P0A9P0 Confidence 100.00% Date Thu Jan 5 11:10:52 GMT 2012 Rank 1 Aligned Residues 469 % Identity 65% Template c1ojtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	E	I	K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	D	A	E	Y	D	V	V	V	L	G	G	G	P	G	G	Y	S	A	A	F	A	A	A	D	E	G	L	K	V	A	I	V	E	R	Y	K	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	N	A	A	V	I	D	E	V	R	H	L	A	A	N	G	I	K	Y	P	E	P	E	L
Template Known Secondary structure			S												S													T	T								S	S	S		S	S							S																				G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	D	K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	.	.	.	.	.	.	.	.	.	.	.	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G	S	R	P	I
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	D	M	L	R	A	Y	K	D	G	V	V	S	R	L	T	G	G	L	A	G	M	A	K	S	R	K	V	D	V	I	Q	G	D	G	Q	F	L	D	P	H	H	L	E	V	S	L	T	A	G	D	A	Y	E	Q	A	A	P	T	G	E	K	K	I	V	A	F	K	N	C	I	I	A	A	G	S	R	V	T
Template Known Secondary structure																												T	T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		Q	L	P	F	I	P	H	E	D	P	R	I	W	D	S	T	D	A	L	E	L	K	E	V	P	E	R	L	L	V	M	G	G	G	I	I	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	I	V	K	V	F	T	K	.	R	I	S	K	K
Query Conservation																																																																												.
Alig confidence								.																																																																				.
Template Conservation								.
Template Sequence		K	L	P	F	I	P	.	E	D	P	R	I	I	D	S	S	G	A	L	A	L	K	E	V	P	G	K	L	L	I	I	G	G	G	I	I	G	L	E	M	G	T	V	Y	S	T	L	G	S	R	L	D	V	V	E	M	M	D	G	L	M	Q	G	A	D	R	D	L	V	K	V	W	Q	K	Q	N	E	Y	R	F
Template Known Secondary structure				S	S			.			T	T								T	T						S						S		S														T								S	S	S	S	S	S	T	T	S													G	G	G
Template Predicted Secondary structure								.
Template SS confidence
		278	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	L	M	L	E	T	K	V	T	A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E	V	D	D	R	G	F	I	R	V	D	K	Q	L	R	T	N	V	P	H	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	I	M	V	N	T	K	T	V	A	V	E	P	K	E	D	G	V	Y	V	T	F	E	G	A	N	A	P	K	E	P	Q	R	Y	D	A	V	L	V	A	A	G	R	A	P	N	G	K	L	I	S	A	E	K	A	G	V	A	V	T	D	R	G	F	I	E	V	D	K	Q	M	R	T	N	V	P	H	I	Y
Template Known Secondary structure							S										T	T								S	S	S			S	S					S												G	G	G	T	T	G	G	G	T	T					T	T	S						T	T	S	B		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	D	I	V	G	Q	P	M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A	G	K	K	H	Y	F	D	P	K	V	I	P	S	I	A	Y	T	E	P	E	V	A	W	V	G	L	T	E	K	E	A	K	E	K	G	I	S	Y	E	T	A	T	F	P	W	A	A	S	G	R	A	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	G	D	I	V	G	Q	P	M	L	A	H	K	A	V	H	E	G	H	V	A	A	E	N	C	A	G	H	K	A	Y	F	D	A	R	V	I	P	G	V	A	Y	T	S	P	E	V	A	W	V	G	E	T	E	L	S	A	K	A	S	A	R	K	I	T	K	A	N	F	P	W	A	A	S	G	R	A	I	A
Template Known Secondary structure				G	G	G	T		S	S																		T	T																S	S	S																T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	C	A	D	G	M	T	K	L	I	F	D	K	E	S	H	R	V	I	G	G	A	I	V	G	T	N	G	G	E	L	L	G	E	I	G	L	A	I	E	M	G	C	D	A	E	D	I	A	L	T	I	H	A	H	P	T	L	H	E	S	V	G	L	A	A	E	V	F	E	G	S	I	T	D	L	P	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	C	D	K	P	F	T	K	L	I	F	D	A	E	T	G	R	I	I	G	G	G	I	V	G	P	N	G	G	D	M	I	G	E	V	C	L	A	I	E	M	G	C	D	A	A	D	I	G	K	T	I	H	P	H	P	T	L	G	E	S	I	G	M	A	A	E	V	A	L	G	T	C	T	D	L	P	P	Q
Template Known Secondary structure		T	T			S									T	T	T		B								S	T	T														T	T		B						T	S				S	S	S	S	T	T											T			T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
		470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		597	.