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Job DescriptionP0A9P0
Confidence99.57%DateThu Jan 5 11:10:52 GMT 2012
Rank163Aligned Residues272
% Identity8%Templatec1ltxR_
PDB info PDB header:transferase/protein bindingChain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50
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Query Sequence  MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LPS. . DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAI
Template Known Secondary structure 

S..B
S

STT


SSSSS
GGG

TTT






GGGGS
TT
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   5.. ..10.........20.........30.........40.........50.........60.........70.........80..
 
   51........60.........70.........80.........90.........100.........110..
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Query Sequence  . . . . . . . . . . . . . . . . . . IPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKV
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Template Sequence  PLSSKDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGT
Template Known Secondary structure  B
SS



STT





TGGG

SS


TTSTGGGG

TT
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  VNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGT
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Template Sequence  VEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSTSCTV
Template Known Secondary structure 


S
SSS
TTGGG
GGGTGGGTTSBSS

TTTS




B
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   268.270.........280.........290.........300.........310.........320.........330.........340.......
 
   193......200..... ....210.........220.........230.........240.........250.........260......
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Query Sequence  VYHALGSQIDVVE. . . . . . MFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDA
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Template Sequence  DGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCK. AVIDQFGQRIISKH
Template Known Secondary structure  TTTTSSSSSSTT
TTTT
TT

TTT

.TT


S
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   350.........360.........370.........380.........390.........400.........410.... .....420........
 
   267..270.....
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Query Sequence  VLVAIGRVP
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Template Sequence  FIIEDSYLS
Template Known Secondary structure  GGGB
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   429430.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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