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Job DescriptionP0A9P0
Confidence100.00%DateThu Jan 5 11:10:52 GMT 2012
Rank42Aligned Residues425
% Identity19%Templatec1gv4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif)
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20........ .30.........40.........50.........60.........70........
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Query Sequence  MSTEIKTQVVVLGAGPAGYSAAFRCADL. . GLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGE
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Template Sequence  IRAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR. . . . PPLSKELWFSDDPNVTKTLQFRQWNGKER
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S
SSTT
SSSS

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S....GGGGTGGGS


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   125....130.........140.........150.........160.........170. ........180.........190.........200
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  PKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHE
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Template Sequence  SIYF. . . . . . . . QPPSFYVSAQDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRA
Template Known Secondary structure  SBS........S
GGG
B
GGGGGGSTT
S

TTTTTTS






TS
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   201... .....210.........220.........230.........240.........250.........260.........270..
 
   159 160.........170.........180.........190......... 200.........210... ......220..
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Query Sequence  D. . . . . . . . . . PRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGS. . . . QIDVVEMFDQVIPA. . ADKDIVKVF
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Template Sequence  GAEVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMGKILPQYLSNWTM
Template Known Secondary structure 
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STT
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   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   223......230.........240.........250.........260.........270.........280.........290.. .......300.
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Query Sequence  TKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDR. GFIRVDKQL
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Template Sequence  EKVKREGVKVMPNAIVQSVGVSGGRLLIKLK. . . . DGRKVETDHIVTAVGLEPNVEL. . AKTGGLEIDSDFGGFRVNAEL
Template Known Secondary structure  TTT

S

TTT....TS
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   353......360.........370.........380... ......390.........400..... ....410.........420......
 
   302.......310...... ...320.........330.........340. ........350
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Query Sequence  RTNVPHIFAIGDIVG. . . . . . . . . QPMLAHKGVHEGHVAAEVIAGKKHY. . . . . . . . . . . . . . . . . . . . . . FDPKVIPSI
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Template Sequence  QAR. SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVG
Template Known Secondary structure  .TT
GGGTTT



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SSTT



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   427.. 430.........440.........450.........460.........470.........480.........490.........500.....
 
   351........360.........370.. .......380.........390........ .400.........410.........420.
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Query Sequence  AYTEPEVAWVGLTEKEAKEKGI. . . . . . . . SYETATFPWAASGRAIASDCADGMTK. LIFDKESHRVIGGAIVGTNGGEL
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Template Sequence  VFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSAPAVPQVPVEGEDYGKGVIFYLRDKVVVGIVLWNVF. . NR
Template Known Secondary structure 


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S


GGG

SSSBS

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   506...510.........520.........530.........540.........550.........560.........570.........580. ..
 
   422.......430.........440......
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Query Sequence  LGEIGLAIEMGCDAEDIALTIHAHP
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Template Sequence  MPIARKIIKDGEQHEDLNEVAKLFN
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GGGT
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   584.....590.........600........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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