Job Description P0A9P0 Confidence 99.95% Date Thu Jan 5 11:10:52 GMT 2012 Rank 94 Aligned Residues 311 % Identity 17% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	.	.	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T	D	I	D
Query Conservation																									.	.
Alig confidence																									.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	T	T										T	T		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G	S	R	P	I	Q	L	P	F	I	P	H	E	D	P	R	I	W	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A	T	G	I	D	P	D	K	K	L	V	K	T	A	G	G	A	.	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						T	T						S								T	T	T						T	S		.					S													T	T	S	T	T			T	T	G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
																		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		165	.	.	.	.	170															.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.										.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	D	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	V	P	E	R	L	L	V	M	G	G	G	I	I	.	.	.	.	.	.	.	.	.	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D	I	V	K	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G
Template Known Secondary structure		S					S														S	S		T	T										S	S		B		T	T																		T	T								S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		222	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		F	T	K	R	.	.	.	.	.	I	S	K	K	F	N	L	M	L	E	T	K	V	T	A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E	V	D	D	R	G	F	I	R
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.																													.	.	.	.																				.	.	.									.
Template Conservation																																							.	.	.	.																				.	.	.									.
Template Sequence		W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M	V	E	T	A	.	.	.	.	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	.	.	.	K	I	A	Q	I	A	G	L	.	T	N	D	A	G	W	C	P
Template Known Secondary structure								T	T	T	T	T		S						T	T	T	T				S				T	T	T					T	.	.	.	.	T							S												.	.	.							T		.		B	T	T	T	B	B
Template Predicted Secondary structure																																							.	.	.	.																				.	.	.									.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.
		297	.	.	300		.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure						.			.																.	.	.																				.	.	.	.
Query SS confidence						.			.																.	.	.																				.	.	.	.
Query Sequence		V	D	K	Q	.	L	R	.	T	N	V	P	H	I	F	A	I	G	D	I	V	G	Q	.	.	.	P	M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A	.	.	.	.	G	K	K	H	Y	F	D	P	K	V	I	P	S	I	A	Y	T	E	P	E	V	A	W	V	G	L	T	E
Query Conservation						.			.																.	.	.																				.	.	.	.
Alig confidence						.			.																.	.	.																				.	.	.	.
Template Conservation
Template Sequence		V	D	I	K	T	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E	P	G	T	P	S	Y	L	N	T	C	Y	S	I	L	A	P	A	Y	G	I	S	V	A	A	I
Template Known Secondary structure		B		S	S	S		B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S																				T	T								B			B							T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions