Phyre 2 alignment of P0A9P0 with c1chuA

Job Description P0A9P0
Confidence 99.75% Date Thu Jan 5 11:10:52 GMT 2012

Rank 132 Aligned Residues 311

% Identity 12% Template c1chuA_

PDB info PDB header:flavoenzyme Chain: A: PDB Molecule:protein (l-aspartate oxidase); PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.															.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	S	T	E	I	K	T	Q	V	V	V	L	G	A	G	P	A	G	Y	S	A	A	F	R	C	A	D	L	G	L	E	T	V	I	V	E	R	Y	N	T	L	G	G	V	C	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	C	I	P	S	K	A	L	L	H	V	A	K	V	I	E	E	A
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																									.
Template Sequence	P	E	H	.	.	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E	F	V	A	S	N	A	R	S	C	V
Template Known Secondary structure		S		.	.			S							S											T	T	T	S	.							S	S		T	T				S															T	T	T
Template Predicted Secondary structure				.	.																									.
Template SS confidence
	5	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	L	A	E	H	G	I	V	F	G	E	P	K	T	D	I	D	K	I	R	T	W	K	E	K	V	I	N	Q	L	T	G	G	L	A	G	M	A	K	G	R	K	V	K	V	V	N	G	L	G	K	F	T	G	A	N	T	L	E	V	E	G	E	N	G	K	T	V	I	N	F	D	N	A	I	I	A	A	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence	Q	W	L	I	D	Q	G	V	L	T	T	L	.	.	.	.	.	.	.	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	T	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G
Template Known Secondary structure						T	T						.	.	.	.	.	.	.								T	T						S									G	G	G	T	T			S	S		B									T	T	T	T								S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
	95	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence	S	R	P	I	Q	L	P	F	I	P	H	E	D	P	R	I	W	D	S	T	D	A	L	E	L	K	E	V	P	E	R	.	.	.	.	.	.	.	.	.	L	L	V	M	G	G	G	I	I	G	L	E	M	G	T	V	Y	H	A	L	G	S	Q	I	D	V	V	E	M	F	D	Q	V	I	P	A	A	D	K	D
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	F	D	E	R	G
Template Known Secondary structure			G	G	G	S	S	S	B	S		G	G	G		S										T	T						T	T											S	T	T		T	T		B								T	T						T	T	S		B		G	G	G	T		T	T	G
Template Predicted Secondary structure
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

										218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	I	V	K	V	F	T	K	R	I	S	K	K	F	N	L	M	L	E	T	K	V	T	A	V	E	A	K	E	D	G	I	Y	V	T	M	E	G	K	K	A	P	A	E	P	Q	R	Y	D	A	V	L	V	A	I	G	R	V	P	N	G	K	N	L	D	A	G	K	A	G	V	E
Query Conservation	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Sequence	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K	R	L	G	A	D	C	M	F	L	D	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	.	.	A
Template Known Secondary structure	G	G	S																	T		S								.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S																T	T	T			T	T	T	S								.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.														.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350

	289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.										.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.
Query Sequence	V	D	D	R	G	F	I	R	V	D	K	Q	L	R	T	N	V	P	H	I	F	A	I	G	D	I	V	G	Q	P	.	.	.	.	.	.	.	.	.	M	L	A	H	K	G	V	H	E	G	H	V	A	A	E	V	I	A
Query Conservation																															.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	Y	T	C	G	G	V	M	V	D	D	H	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T
Template Known Secondary structure				S							T	T		B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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