Job Description P39161 Confidence 57.27% Date Thu Jan 5 11:58:17 GMT 2012 Rank 366 Aligned Residues 98 % Identity 13% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	R	E	I	A	E	M	L	D	V	T	R	T	V	V	R	E	A	L	I	M	L	E	I	K	G	L	V	E	V	R	R	G	A	G	I	Y	V	L	D	N	S	G	S	Q	N	T	D	S	P	D	A	N	V	C	N	D	A	G	P	F	E	L	L	Q	A	R	Q	L	L	E	S	N	I	A	E	F	A	A
Query Conservation
Alig confidence																					.	.	.	.																																		.
Template Conservation																					.	.	.	.																																		.
Template Sequence		S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	.	.	.	.	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	.	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	D	R	A	H	L	R	R	Q
Template Known Secondary structure											T										.	.	.	.				T	S	S			S				S	S					B															.			T	T											T
Template Predicted Secondary structure																					.	.	.	.																																		.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	T	R	E	D	I	V	K	M	R	Q	A	L	Q	L	E	E	R	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	E	L	L	S	A	R	I	G	K	L	Q	K	M	A	A	A	V	E	Q	A	M	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions