 |
Job Description | P06965 | Confidence | 46.57% | Date | Wed Jan 25 15:20:12 GMT 2012 |
Rank | 132 | Aligned Residues | 27 |
% Identity | 7% | Template | d2p7vb1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | 2.60 |
|
  |   |
3 | . | . | . | . | . | . | 10 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | T | D | A | L | L | Y | F | G | . |
. |
. |
. |
. |
. |
. |
S | K | T | K | L | A | Q | A | A | G | I | R | L | A | S | L | Y | S |
Query Conservation |   |
|   |   |
|
|   |   |
|
| . | . | . | . | . | . | . |   |   |   |   |
|
|   |   |
|
|
|
|   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|
|
Template Sequence |   |
A | K | V | L | R | M | R | F | G | I | D | M | N | T | D | Y | T | L | E | E | V | G | K | Q | F | D | V | T | R | E | R | I | R | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | T | T | S | S | S |
|
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
556 | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|