Job Description P0A9J4 Confidence 99.73% Date Thu Jan 5 11:10:27 GMT 2012 Rank 55 Aligned Residues 264 % Identity 17% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.															.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																									.	.												.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.												.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	V	L	G	C	G	A	L	G	Q	L	W	L	T	A	L	C	K	Q	G	.	.	H	E	V	Q	G	W	L	R	V	P	Q	.	.	.	.	P	Y	C	S	V	N	L	V	E	T	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	F	N	E	S	L	T	A	N	D	P	D	F
Query Conservation																									.	.												.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.												.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F	S	R
Template Known Secondary structure										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.													.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																										.																		.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.																										.																		.	.	.	.	.	.	.	.
Query Sequence		L	A	T	S	D	L	L	L	V	T	L	K	A	W	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	S	D	A	V	K	S	L	A	S	T	L	P	V	T	T	P	I	L	L	I	H	N	G	.	M	G	T	I	E	E	L	Q	N	I	Q	Q	P	L	L	M	G	.	.	.	.	.	.	.	.	T	T	T
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.																										.																		.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																										.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D	F	A	L	A	H
Template Known Secondary structure		G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		H	A	A	R	R	D	G	N	V	I	I	H	V	A	N	G	I	T	H	I	G	P	A	R	Q	Q	D	G	D	Y	S	Y	L	A	D	I	L	Q	T	V	L	P	D	.	V	A	W	H	N	N	I	R	A	E	L	W	R	K	L	A	V	N	C	V	I	N	P	L	T	A	I	W	N	C	P	N	G	E	L	R
Query Conservation																																													.
Alig confidence																						.																							.																												.	.	.	.	.	.	.	.	.
Template Conservation																						.																																																			.	.	.	.	.	.	.	.	.
Template Sequence		A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	.	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S								S				.				S	S												G	G	G		S	S																													.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.											.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		H	H	P	Q	E	I	M	Q	I	C	E	E	V	A	A	V	I	E	R	E	G	H	H	T	S	A	E	D	L	R	D	Y	V	M	Q	.	.	.	.	.	.	.	.	.	.	V	I	D	A	T	A	E	N	I	S	S	M	L	Q	D	I	R	A	L	R	H	T	E	I	D	Y	I	N	G	F	L	L	R	R	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.													.	.													.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	N	Q	L	A	L	Y	C	E	A	M	G	.	.	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R	A	V	L	W	P	G	A	G	V	G	G	H	C	L	T	K	D	T	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	G	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.											T	T	.	.												T	S			S	S	S									S				S	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											249	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300													.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	H	G	I	A	V	P	E	N	T	R	L	F	E	M	V	K	R	K	E	S	E	Y	E	R	I	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	G	R	G	E	L	D	Y	P	E	G	A	D	S	I	Y	V	L	A	R	K	V	N	D	F	M	P	A
Template Known Secondary structure		T	T	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions