 |
Job Description | P0A9J4 | Confidence | 98.33% | Date | Thu Jan 5 11:10:27 GMT 2012 |
Rank | 159 | Aligned Residues | 97 |
% Identity | 22% | Template | c1ur5C_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:malate dehydrogenase; |
PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface
|
Resolution | 1.75 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | |
. | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
| . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
Query Sequence |   |
M | K | I | T | V | L | G | C | G | A | L | G | Q | L | W | L | T | A | L | C | K | Q | G | H | . |
E | V | Q | G | W | L | R | V | P | Q | P | Y | C | S | V | N | L | V | E | T | D | G | S | . |
. |
. |
. |
I | F | N | E | S | L | T | A | N | D | P | D | F | L | A | T | S | D | L | L | L | V | T | L | K | A | . |
. |
Query Conservation |   |
|
|
|   |
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|   | . |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
|   |
|   |   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|   |
|   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|
|   |
|   |
Template Sequence |   |
K | K | I | S | I | I | G | A | G | F | V | G | S | T | T | A | H | W | L | A | A | K | E | L | G | D | I | V | L | L | D | I | V | E | G | V | P | Q | G | K | A | L | D | L | Y | E | A | S | P | I | E | G | F | D | V | R | V | T | G | T | N | N | Y | A | D | T | A | N | S | D | V | I | V | V | T | S | G | A | R | E |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
| S | S | T | T |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T |
|
|
|
|  |  |  |  | S |
| G | G | G | G | T | T |
| S |  |  |  |  |
|
|
|
|
|  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
|
|
|
|
|
|
|
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
W | Q | V | S | D | A | V | K | S | L | A | S | T | L | P | V | T | T | P | I | L | L | I | H | N |
Query Conservation |   |
. | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   | . |   |   |
|   |   |   |
|
|
|   |
|
|
Template Sequence |   |
D | L | I | K | V | N | A | D | I | T | R | A | C | I | S | Q | A | A | P | . |
L | S | P | N | A | V | I | I | M | V | N | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | . | G |
| T | T |
|  |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
. | 110 | . | . | . | . | . | . | . | . | . | 120 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|