Job Description P0A9J4 Confidence 99.88% Date Thu Jan 5 11:10:27 GMT 2012 Rank 34 Aligned Residues 268 % Identity 15% Template c1mv8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa Resolution 1.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50														.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	V	L	G	C	G	A	L	G	Q	L	W	L	T	A	L	C	K	Q	G	H	E	V	Q	G	W	L	R	V	P	Q	P	Y	C	S	V	N	L	V	E	T	D	G	S	I	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	L	T	A	N	D	P	D	F	L	A	T	S	D	L	L
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	I	S	I	F	G	L	G	Y	V	G	A	V	C	A	G	C	L	S	A	R	G	H	E	V	I	G	V	D	V	S	S	T	K	I	D	L	I	N	Q	G	K	S	P	I	V	E	P	G	L	E	A	L	L	Q	Q	G	R	Q	T	G	R	L	S	G	T	T	D	F	K	K	A	V	L	D	S	D	V	S
Template Known Secondary structure										S	T	T											T	T								S										T	T			S	S			T	T											T	T						S								T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		68	.	70	.	.	.											.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																				.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.																				.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	T	L	K	A	.	.	.	.	.	.	.	.	.	.	W	Q	V	S	D	A	V	K	S	L	A	S	T	L	P	V	T	T	P	.	.	I	L	L	I	H	N	G	M	G	T	I	E	E	L	Q	N	I	Q	Q	P	.	.	.	.	.	.	.	.	.	.	L	L	M	G	T	T	T	H	A	A	R	R	D
Query Conservation								.	.	.	.	.	.	.	.	.	.																				.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																				.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	C	V	G	T	P	S	K	K	N	G	D	L	D	L	G	Y	I	E	T	V	C	R	E	I	G	F	A	I	R	E	K	S	E	R	H	T	V	V	V	R	S	T	V	L	P	G	T	V	N	N	V	V	I	P	L	I	E	D	C	S	G	K	K	A	G	V	D	F	G	V	G	T	N	P	E	F	L	R
Template Known Secondary structure									B		T	T	S	S	B																	T	T			S								S				T	T					T										S			B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	I	I	H	V	A	N	G	I	T	H	I	G	P	A	R	Q	Q	D	G	D	Y	S	Y	L	A	D	I	L	Q	T	V	L	P	D	V	A	W	H	N	N	I	R	A	E	L	W	R	K	L	A	V	N	C	V	I	N	P	L	T	A	I	W	N	C	P	N	G	E	L	R	H	H	P	Q	E	I	M
Query Conservation
Alig confidence																																											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	T	A	I	K	D	Y	D	F	P	P	M	T	V	I	G	E	L	D	K	Q	T	G	D	L	L	E	E	I	Y	R	E	L	D	A	P	I	I	R	K	.	T	V	E	V	A	E	M	I	K	Y	T	C	N	V	W	H	A	A	K	V	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S							S		S							S	S												T	T	S	S	S						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	C	E	E	V	A	A	V	I	E	R	E	G	H	H	T	S	A	E	D	L	R	D	Y	V	M	Q	V	I	.	.	.	.	.	.	.	.	.	.	D	A	T	A	E	N	I	S	S	M	L	Q	D	I	R	A	L	R	H	T	E	I	D	Y	I	N	G	F	L	L	R	R	A	R	A	H	G	I	A	V
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.													.	.															.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	N	E	I	G	N	I	A	K	A	V	G	.	.	V	D	G	R	E	V	M	D	V	I	C	Q	D	H	K	L	N	L	S	R	Y	Y	M	R	P	G	F	A	F	G	G	S	C	L	P	K	D	V	R	A	.	.	.	.	.	.	.	.	.	.	.	.	L	T	Y	R	A	S	Q	L	D	V	E	H
Template Known Secondary structure		.	.											T	T	.	.	S										T	T		T	T	T	T	T	S	S	T	T		S			S				S	S	S								.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure		.	.													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				224	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.													.	.	.	.	280	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	E	N	T	R	L	F	E	M	V	.	K	R	K	E	S	E	Y	E	R	I	G	T	G	L	P	R
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		P	M	L	G	S	L	M	R	S	N	S	N	Q	V	Q	K	A	F	D	L	I	T	S	H	D	T	R
Template Known Secondary structure		T	T	G	G	G																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions