Job Description P0A9J4 Confidence 99.77% Date Thu Jan 5 11:10:27 GMT 2012 Rank 48 Aligned Residues 259 % Identity 15% Template c1dliA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation Resolution 2.31 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.												.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	V	L	G	C	G	A	L	G	Q	L	W	L	T	A	L	C	K	Q	G	H	E	V	Q	G	W	L	R	V	P	Q	P	Y	C	S	V	N	L	V	E	T	D	G	.	.	.	.	.	.	.	.	.	.	.	S	I	F	N	E	S	L	T	A	N	D	P	D	F	L	A	T	S	D	L	L	L	V
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		M	K	I	A	V	A	G	S	G	Y	V	G	L	S	L	G	V	L	L	S	.	L	Q	N	E	V	T	I	V	D	I	L	P	S	K	V	D	K	I	N	N	G	L	S	P	I	Q	D	E	Y	I	E	Y	Y	L	K	S	K	Q	L	S	I	K	A	T	L	D	S	K	A	A	Y	K	E	A	E	L	V	I	I
Template Known Secondary structure										S											T	.	T	T	S							S										T	T			S	S												S								S										S
Template Predicted Secondary structure																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		70	.	.	.												.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	K	A	.	.	.	.	.	.	.	.	.	.	.	W	Q	V	S	D	A	V	K	S	L	A	S	T	L	P	V	T	T	P	I	L	L	I	H	N	G	M	G	T	I	E	E	L	Q	N	I	Q	Q	P	L	L	M	G	T	T	T	H	A	A	R	R	D	G	N	V	I	I	H	V	A	N	G	I	T	H
Query Conservation						.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	P	T	N	Y	N	S	R	I	N	Y	F	D	T	Q	H	V	E	T	V	I	K	E	V	L	S	V	N	S	H	A	T	L	I	I	K	S	T	I	P	I	G	F	I	T	E	M	R	Q	K	F	Q	T	D	R	I	I	F	S	P	E	F	L	R	E	S	K	A	L	Y	D	N	L	Y	P	S	R	I	I
Template Known Secondary structure									T	T	T	T																			S	S							S				T	T										T		S											T	T	S	T	T					S		S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		I	G	P	A	R	Q	Q	.	.	.	.	.	.	.	.	D	G	D	Y	S	Y	L	A	D	I	L	Q	T	V	L	P	D	V	A	W	H	N	N	I	R	A	E	L	W	R	K	L	A	V	N	C	V	I	N	P	L	T	A	I	W	N	C	P	N	G	E	L	R	H	H	P	Q	E	I	M	Q	I	C	E	E
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																					.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	C	E	E	N	D	S	P	K	V	K	A	D	A	E	K	F	A	L	L	L	K	S	A	A	K	K	N	N	V	P	V	L	I	.	M	G	A	S	E	A	E	A	V	K	L	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	L	A	L	R	V	A	Y	F	N	E
Template Known Secondary structure						T	T	S																				S	S	S							.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.																			.	210	.	.	.	.	.	.	.	.	.	220
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.									.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		V	A	A	V	I	E	R	E	G	H	H	T	S	A	E	D	L	R	D	Y	V	M	Q	.	.	.	.	.	.	.	.	V	I	D	A	T	A	E	N	I	S	S	M	L	Q	D	I	R	A	L	R	H	T	E	I	D	Y	I	N	G	F	L	L	R	R	A	R	A	H	G	I	A	V	P	E	N	T	R	L	F
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence											.	.													.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	T	Y	A	E	S	R	K	.	.	L	N	S	H	M	I	I	Q	G	I	S	Y	D	D	R	I	G	M	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	L	L	A	N	Y	N	N	I	P	Q	T	L	I	E	A	I	V
Template Known Secondary structure									T	T	.	.												T	S	T	T	T		S	S	S					S				S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	S	S		S
Template Predicted Secondary structure											.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.															.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	V	K	R	K	E	S	E	Y	E	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	N	N	V	R	K	S	Y	I	A	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions