Job Description P39360 Confidence 100.00% Date Thu Jan 5 11:59:50 GMT 2012 Rank 3 Aligned Residues 249 % Identity 20% Template c3r4kD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution Resolution 2.46 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		S	L	V	R	A	E	K	I	L	T	H	I	A	W	V	G	.	M	A	S	Y	M	E	L	L	N	K	F	Q	Y	P	K	S	S	L	L	N	L	L	N	V	M	V	D	C	G	F	L	I	K	N	K	N	G	Y	Y	S	L	G	I	K	N	Y	E	L	G	C	Q	A	L	H	R	Q	N	I	F	E	V	T	K
Query Conservation																		.
Alig confidence																		.																																				.
Template Conservation																																																						.
Template Sequence		T	V	S	K	A	L	T	L	L	T	Y	F	N	H	G	R	L	E	I	G	L	S	D	L	T	R	L	S	G	X	N	K	A	T	V	Y	R	L	X	S	E	L	Q	E	A	G	F	V	E	Q	V	E	.	R	S	Y	R	L	G	P	Q	V	L	R	L	A	A	L	R	E	A	S	V	P	I	L	S	A	S	R
Template Known Secondary structure											T	T		B	T	T	B	S													S															T	T	S						.							T	T												S
Template Predicted Secondary structure																																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	M	Q	E	L	S	L	K	S	G	L	V	C	H	L	G	A	M	E	S	I	S	A	I	Y	L	D	K	I	E	S	P	D	S	V	P	T	S	K	S	W	I	G	K	K	L	E	L	H	I	T	A	L	G	K	A	L	L	A	W	K	T	R	E	E	L	D	Y	F	L	E	A	L	T	L	T	P	H	T
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		R	V	L	R	E	L	S	E	D	T	G	E	T	T	H	L	S	L	L	Q	G	E	Q	L	A	S	L	S	H	A	Y	S	S	R	N	A	T	K	V	X	X	E	D	A	E	V	L	T	F	H	G	T	A	S	G	L	A	V	L	A	Y	S	E	P	S	F	V	D	A	V	L	A	A	.	P	L	T	A	R	T
Template Known Secondary structure												S	S									T	T											S	S		S	S						T	T					T	T	T	S								T	T	S											S	.					S	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	T	F	T	D	K	K	L	F	L	E	E	L	Q	K	T	R	L	R	G	W	A	I	D	N	E	E	S	T	Y	G	A	V	C	L	S	M	P	V	F	N	M	Y	N	R	V	N	Y	A	I	S	L	S	G	D	P	V	V	Y	S	G	N	K	I	D	S	Y	L	E	L	L	R	K	C	A	E	Q	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	T	Q	T	D	P	A	A	I	R	A	E	I	A	E	V	R	R	T	G	L	A	Q	S	I	G	G	F	E	A	E	V	H	S	H	A	V	P	I	F	G	P	D	R	A	V	L	G	A	L	A	V	A	A	P	T	S	R	X	T	P	D	Q	K	R	T	I	P	P	A	L	R	A	A	G	L	S	L	T
Template Known Secondary structure		T	T																			S						S	S	S	S	T	T											T	T	S												G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		247	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	L	G	Y	R	N	E	N	E	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	I	G	G	A	C	P	P	E	F	P
Template Known Secondary structure				T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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