Job Description P39360 Confidence 99.04% Date Thu Jan 5 11:59:50 GMT 2012 Rank 17 Aligned Residues 181 % Identity 11% Template c2qufB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Resolution 2.80 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		E	K	I	L	T	H	I	A	W	V	G	M	A	S	Y	M	E	L	L	N	K	F	Q	Y	P	K	S	S	L	L	N	L	L	N	V	M	V	D	C	G	F	L	I	K	N	K	N	G	Y	.	.	.	.	Y	S	L	G	I	K	N	Y	E	L	G	C	Q	A	L	H	R	Q	N	I	F	E	V	T	K	R	P
Query Conservation																																																			.	.	.	.
Alig confidence											.																																								.	.	.	.
Template Conservation											.
Template Sequence		R	D	L	L	S	H	L	T	A	.	M	E	A	Y	F	S	L	L	S	S	K	V	S	V	S	S	T	A	V	A	K	H	L	K	I	M	E	R	E	G	V	L	Q	S	Y	Y	K	I	S	I	A	K	S	Y	V	F	T	L	T	P	E	M	F	W	Y	K	G	L	D	L	G	D	A	E	L	R	D	F	E	I
Template Known Secondary structure									T		.	T	T	T		S	S	S	S		S	S	S																T	T	T	S																			T	T										S
Template Predicted Secondary structure											.
Template SS confidence
		15	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	E	L	S	L	K	S	G	L	V	C	H	L	G	A	M	E	S	I	S	A	I	Y	L	D	K	I	E	S	P	D	S	V	P	T	S	K	S	W	I	G	K	K	L	E	L	H	I	T	A	L	G	K	A	L	L	A	W	K	.	.	.	.	.	.	.	.	.	.	.	T	R	E	E	L	D	Y	F	L
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		S	L	S	G	L	D	T	E	P	S	T	L	K	E	M	I	T	D	F	I	K	A	N	K	E	L	E	K	V	L	E	A	F	K	T	I	E	.	S	Y	R	S	S	L	M	R	K	I	K	E	A	Y	L	K	E	I	G	D	M	T	Q	L	A	I	L	H	Y	L	L	L	N	G	R	A	T	V	E	E	L	S
Template Known Secondary structure				T	T	S		S				S																											.																T	T	T			T	T												S
Template Predicted Secondary structure																																							.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	T	L	T	P	H	T	R	N	T	F	T	D	K	K	L	F	L	E	E	L	Q	K	T	R	L	R	G	W	A	I	D	N	E	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	N	L	K	E	R	E	V	R	E	K	I	S	E	M	A	R	F	V	P	V	K	I	I	N	D	N	T	V	V	L	D	E	D	Q	I
Template Known Secondary structure					T															T	T	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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