Job Description P39360 Confidence 100.00% Date Thu Jan 5 11:59:50 GMT 2012 Rank 11 Aligned Residues 178 % Identity 28% Template c1ysqA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij Resolution 1.75 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	N	I	F	E	V	T	K	R	P	M	Q	E	L	S	L	K	S	G	L	V	C	H	L	G	A	M	E	S	I	S	A	I	Y	L	D	K	I	E	S	P	D	S	V	P	T	S	K	S	W	I	G	K	K	L	E	L	H	I	T	A	L	G	K	A	L	L	A	W	K	T	R	E	E	L	D	Y	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	N	I	I	H	I	A	A	P	H	L	E	A	L	N	I	A	T	G	E	T	I	N	F	S	S	R	E	D	D	H	A	I	L	I	Y	K	L	E	P	T	T	G	M	L	R	T	R	A	Y	I	G	Q	H	M	P	L	Y	C	S	A	M	G	K	I	Y	M	A	F	G	H	P	D	Y	V	K	S	Y	W
Template Known Secondary structure																						S									T	T											S	S						S			T	T					G	G	G										T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		158	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		E	A	.	.	L	T	L	T	P	H	T	R	N	T	F	T	D	K	K	L	F	L	E	E	L	Q	K	T	R	L	R	G	W	A	I	D	N	E	E	S	T	Y	G	A	V	C	L	S	M	P	V	F	N	M	Y	N	R	V	N	Y	A	I	S	L	S	G	D	P	V	V	Y	S	G	N	K	I	D	S	Y	L
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		E	S	H	Q	H	E	I	Q	P	L	T	R	N	T	I	T	E	L	P	A	M	F	D	E	L	A	H	I	R	E	S	G	A	A	M	D	R	E	E	N	E	L	G	V	S	C	I	A	V	P	V	F	D	I	H	G	R	V	P	Y	A	V	S	I	S	L	S	T	S	R	L	K	Q	V	G	E	K	N	L	L
Template Known Secondary structure				T	T	T	T				S	S	T	T				S															T						S	S	S	S	T	T											T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	R	K	C	A	E	Q	I	S	Y	G	L	G	Y	R	N	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	L	R	E	T	A	Q	A	I	S	N	E	L	G	F	T	A	I	T
Template Known Secondary structure																				T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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