Job Description P0AF52 Confidence 100.00% Date Thu Jan 5 11:25:13 GMT 2012 Rank 1 Aligned Residues 384 % Identity 17% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	F	K	I	S	Q	R	G	S	T	V	R	Q	E	V	V	A	G	L	T	T	F	L	A	M	V	Y	S	V	I	V	V	P	G	M	L	G	K	A	G	F	P	P	A	A	V	F	V	A	T	C	L	V	A	G	L	G	S	I	V	M	G	L	W	A	N	L	P	L	A	I	G	C	A	I	S	L	T	A
Query Conservation
Alig confidence										.																												.	.	.											.	.	.	.																								.	.
Template Conservation										.																												.	.	.											.	.	.	.																								.	.
Template Sequence		R	A	I	G	V	S	E	R	.	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	.	.	.	F	H	I	N	P	A	T	V	L	L	.	.	.	.	F	N	G	I	G	T	L	L	Y	L	F	I	C	K	G	K	I	P	A	Y	L	G	S	.	.	S	F
Template Known Secondary structure				B		T	T			.																											T	.	.	.	T	T	S								.	.	.	.													T	T	T									.	.		G
Template Predicted Secondary structure										.																												.	.	.											.	.	.	.																								.	.
Template SS confidence
		4	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		F	T	A	F	S	L	V	L	G	Q	H	I	S	V	P	V	A	L	G	A	V	F	L	M	G	V	L	F	T	V	I	S	A	.	.	.	.	T	G	I	R	S	W	I	L	R	N	L	P	H	G	V	A	H	G	T	G	I	G	I	G	L	F	L	L	L	I	A	A	N	G	V	G	L	V	I	K	N	P	L
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.				.
Template Conservation																																										.
Template Sequence		A	F	I	S	P	V	L	L	L	L	P	L	G	Y	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	.	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	Q
Template Known Secondary structure		G	G								G	G	G																									T	T		S	.																																T	S	S		B	T	T	B
Template Predicted Secondary structure																																										.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	P	V	A	L	G	D	F	A	T	F	P	V	I	M	S	L	V	G	L	A	V	I	I	G	L	E	K	L	K	V	P	G	G	I	L	L	T	I	I	G	I	S	I	V	G	L	I	F	D	P	N	V	H	F	S	G	V	F	A	M	P	S	L	S	D	E	N	G	N	S	L	I	G	S	L	D	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.																																																					.
Template Conservation			.	.	.	.	.	.	.	.																																																					.
Template Sequence		T	.	.	.	.	.	.	.	.	P	D	S	K	T	I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	.	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	T	P	R	F
Template Known Secondary structure			.	.	.	.	.	.	.	.																						S	S	S	T	T	T	T	T																				T	T	S	S	.					S		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		153									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		M	G	A	L	N	P	V	V	L	P	S	V	L	A	L	V	M	T	A	V	F	D	A	T	G	T	I	R	A	V	A	G	Q	A	N	L	L	D	K	D	G	Q	I	I	D	G	G	K	A	L	T	T	D	S	M	S	S	V	F	S	G	L	V	G	A	A	P	A	A	.	V	Y	I	E	S	A	A	G	T	A
Query Conservation																																																																							.
Alig confidence																																	.	.	.	.	.	.																																	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		E	W	F	A	I	L	T	I	L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	.	.	.	.	.	.	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I
Template Known Secondary structure										T																						T	.	.	.	.	.	.	S		T																								T
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.								370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																					.	.	.	.	.	.	.
Query SS confidence																							.	.	.																					.	.	.	.	.	.	.
Query Sequence		A	G	G	K	T	G	L	T	A	I	T	V	G	V	L	F	L	L	I	L	F	.	.	.	L	S	P	L	S	Y	L	V	P	G	Y	A	T	A	P	A	L	M	Y	V	.	.	.	.	.	.	.	G	L	L	M	L	S	N	V	A	K	I	D	F	A	D	F	V	D	A	M	A	G	L	V	T	A	V	F	I
Query Conservation																							.	.	.																					.	.	.	.	.	.	.
Alig confidence																							.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	V	Y	S	T	W	V	I	G	G	A	A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V
Template Known Secondary structure			T	B																	T										T	T	S																											T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
							399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	V	L	T	C	N	I	V	T	G	I	M	I	G	F	A	T	L	V	I	G	R	L	V	S	G
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		S	G	A	K	V	N	I	G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F	K
Template Known Secondary structure								S	S	S																					T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.