Job Description P0AF52 Confidence 1.90% Date Thu Jan 5 11:25:13 GMT 2012 Rank 51 Aligned Residues 286 % Identity 8% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	P	S	A	R	T	G	G	S	L	D	A	W	F	K	I	S	Q	R	G	S	T	V	R	Q	E	V	V	A	G	L	T	T	F	L	A	M	V	Y	S	V	I	V	V	P	G	M	L	G	K	A	G	F	P	P	A	A	V	F	V	A	T	C	L	V	A	G	L	G	S	I	V	M	G	L	W	A	N	L
Query Conservation
Alig confidence																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	.	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	.	F	G	I	P	H	T	L
Template Known Secondary structure							S	S	G	G	G	G		T	T	T		S	S		T	T	.	S	S															.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S	.	T	T				T
Template Predicted Secondary structure																							.																	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		P	L	A	I	G	C	A	I	S	L	T	A	F	T	A	F	S	L	V	L	G	Q	H	I	S	V	P	V	A	L	G	A	.	V	F	L	M	G	V	L	F	T	V	I	S	A	T	G	I	R	S	W	I	L	R	N	L	P	H	G	V	A	H	G	T	G	I	G	I	G	L	F	L	L	L	I	A	A	N	G
Query Conservation																																		.
Alig confidence																																		.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	.	.	.	.	.	.	.	.	.	.	S	V	G	M	L	L	M	Y	L	P	R
Template Known Secondary structure																				S	S				T	T																																			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.											.	290	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																													.	.	.																																	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																																	.	.	.	.	.	.	.
Query Sequence		V	G	L	V	I	K	N	P	L	D	G	L	P	V	A	L	G	D	F	A	T	F	P	V	I	M	S	.	.	.	L	V	G	L	A	V	I	I	G	L	E	K	L	K	V	P	G	G	I	L	L	T	I	I	G	I	S	I	V	G	L	I	.	.	.	.	.	.	.	F	D	P	N	V	H	F	S	G	V	F
Query Conservation																													.	.	.																																	.	.	.	.	.	.	.
Alig confidence																													.	.	.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I
Template Known Secondary structure				T					S	S								T											T											T		S	S																																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		A	M	P	S	L	S	D	E	N	G	N	S	L	I	G	S	L	D	I	M	G	A	L	N	P	V	V	L	P	S	V	L	A	L	V	M	T	A	V	F	D	A	T	G	T	I	R	A	V	A	G	Q	A	N	L	L	.	.	.	D	K	D	G	Q	I	I	D	G	G	K	A	L	T	T	D	S	M	S	S	V
Query Conservation																																																										.	.	.
Alig confidence																																																										.	.	.
Template Conservation
Template Sequence		N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I
Template Known Secondary structure								G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		308	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	G	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	V	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions