Job Description P0AF52 Confidence 5.38% Date Thu Jan 5 11:25:13 GMT 2012 Rank 6 Aligned Residues 242 % Identity 12% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	V	I	I	G	L	E	K	L	K	V	P	G	G	I	L	L	T	I	I	G	I	S	I	V	G	L	I	F	D	P	N	V	H	F	S	G	V	F	A	M	P	S	L	S	D	E	N	G	N	S	L	I	G	S	L	D	I	M	G	A	L	N	P	V	V	L	P	S	V	L	A	L	V	M	T	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S
Template Known Secondary structure													G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	D	A	T	G	T	I	R	A	V	A	G	Q	A	N	L	L	D	K	D	G	Q	I	I	D	G	G	K	A	L	T	T	D	S	M	S	S	V	F	S	G	L	V	G	A	A	P	A	A	V	Y	I	E	S	A	A	G	T	A	A	G	G	K	T	G	L	T	A	I	T	V	G	V	L	F	L	L	I	L	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G
Template Known Secondary structure																	T							S		S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		F	L	S	P	L	S	Y	L	V	P	G	Y	A	T	A	P	A	L	M	Y	V	G	L	L	M	L	S	N	V	A	K	I	D	F	A	D	F	V	D	A	M	A	G	L	V	T	A	V	F	I	V	L	T	C	N	I	V	T	G	I	M	I	G	F	A	T	L	V	I	G	R	L	V	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	W	K	.	.	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	I	N	D	D	D
Template Known Secondary structure					T	.	.	T																						T	S	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T		S	S	S	S
Template Predicted Secondary structure						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		446	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.																	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
												422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	S	G	E	W	R	K	L	N	I	G	T	V	V	I	A	V	A	L	V	T	F	Y	A	G	G	W	A	I
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	G	I	S	V	T	S	S	M	F	V	T	D	R	S	F	N	I	A	A	Y	G	I	M	I	V	L	A	V	L	Y	T	L	F	W	V	L
Template Known Secondary structure		T	T							S						T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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