Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF52
Confidence1.46%DateThu Jan 5 11:25:13 GMT 2012
Rank86Aligned Residues23
% Identity30%Templatec2pjvA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:envelope glycoprotein; PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc2 micelle
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   301........310.........320...
Predicted Secondary structure 


Query SS confidence 






















Query Sequence  TDSMSSVFSGLVGAAPAAVYIES
Query Conservation 
 










  
 

 


Alig confidence 






















Template Conservation 




















 
Template Sequence  AVGIGALFLGFLGAAGSTVGAAS
Template Known Secondary structure 

STT

SSSSTT
Template Predicted Secondary structure 








Template SS confidence 






















   1........10.........20...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions