Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 58 Aligned Residues 268 % Identity 11% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L	L	Q
Query Conservation
Alig confidence											.	.	.	.																									.																	.	.	.	.
Template Conservation											.	.	.	.																									.																	.	.	.	.
Template Sequence		I	V	I	Y	N	A	Q	H	E	.	.	.	.	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	.	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	.	.	.	.	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A
Template Known Secondary structure								S			.	.	.	.																									.												G	G	G			.	.	.	.		S					S	S	S									T	T		B
Template Predicted Secondary structure											.	.	.	.																									.																	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	.	.	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F	T
Query Conservation																																																					.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																															.	.								.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																								.	.
Template Sequence		P	L	D	A	A	T	L	A	Q	V	E	.	.	.	.	.	.	.	.	.	.	P	Q	Y	R	P	S	H	G	R	W	I	G	I	A	A	R	S	T	V	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	.	.	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F
Template Known Secondary structure									T	T	B		.	.	.	.	.	.	.	.	.	.	G	G	G	S		T	T		S	S														T	T	T	S		G	G	G			S	S	G	G	G	G	.	.	G	S	G	G	G	T	T	S					T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.											.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		Q	A	I	V	S	A	L	L	E	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	T	L	A	W	L	K	A	M	K	T	N	F	.	.	.	.	.	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.				S	S											T	S	S	S						T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.																				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	.	.	.	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence		V	D	G	A	K	T	G	E	N	S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	Q	Q	Q	A	Q	A	F	I	K	W	I	T	G	K	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	G	A	A	S	N	P
Template Known Secondary structure						T	T		T	T	T	T	T								T	T		G	G	G										B	T	T		T	T													S										S	S	S			B			B	T	T					T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions