Phyre 2 alignment of P76223 with d1xc1a

Job Description P76223
Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012

Rank 60 Aligned Residues 303

% Identity 12% Template d1xc1a_

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 1.51

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L	L	Q	T	G
Query Conservation
Alig confidence										.	.																									.																	.	.	.	.
Template Conservation										.	.																									.																	.	.	.	.
Template Sequence	I	T	V	Y	N	G	Q	H	K	.	.	E	A	A	Q	A	V	A	D	A	F	T	R	A	T	G	I	K	V	K	L	N	S	A	K	.	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	.	.	.	.	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P	L
Template Known Secondary structure							S			.	.																									.										T	T		T	T	S	S	.	.	.	.		S					S											T	T		B
Template Predicted Secondary structure										.	.																									.																	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	.	.	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F	T	G	T
Query Conservation																																																		.	.
Alig confidence											.	.	.	.	.	.	.	.																																.	.								.	.
Template Conservation											.	.	.	.	.	.	.	.																																									.	.
Template Sequence	P	A	S	T	I	N	E	T	R	G	.	.	.	.	.	.	.	.	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	K	S	V	L	N	Y	.	.	A	T	P	K	W	K	N	R	I	G	Y	V	P	T	S	G	A	F	L	E
Template Known Secondary structure								T			.	.	.	.	.	.	.	.	T	T	S				T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	.	.	S	S	G	G	G	T	T	T					T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
	75	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H	A	Q	Q
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence	Q	I	V	A	I	V	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	G	.	.	.	.	.	K	P	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	F
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	.	.	.	.	.				S	S										T	T	S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.																				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	.	.	.	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D	G	Q	R
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																												.	.
Template Conservation																																																															.	.
Template Sequence	A	R	E	K	G	V	Q	N	V	H	T	R	L	N	F	V	R	H	R	D	P	G	A	L	V	T	Y	S	G	A	A	V	L	K	S	S	Q	N	K	D	E	A	K	K	F	V	A	F	L	A	G	K	E	G	Q	R	A	L	T	A	V	R	.	.	A	E	Y	P	L	N	P	H	V	V	S	T	F	N	L	E
Template Known Secondary structure						G	G	G										T	T		G	G	G										B	T	T		S														S								T	T	T	S	.	.					S	S	T	T				S	S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	A	G	W	V	N	A	L	E	Q	E	W	L	H
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	P	I	A	K	L	E	A	P	Q	V	S	A	T	T	V	S	E	K	E	H	A	T	R	L	L	E	Q	A	G	M	K
Template Known Secondary structure	.		G	G	G	S																								T
Template Predicted Secondary structure	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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