Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 55 Aligned Residues 310 % Identity 12% Template d1q35a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L
Query Conservation
Alig confidence													.	.	.	.																										.	.	.														.	.	.	.
Template Conservation													.	.	.	.																										.	.	.														.	.	.	.
Template Sequence		N	E	V	N	V	Y	S	Y	R	Q	P	.	.	.	.	Y	L	I	E	P	M	L	K	N	F	E	K	D	T	G	I	K	V	N	I	I	F	A	D	G	.	.	.	L	V	D	R	V	K	Q	E	G	E	L	S	P	.	.	.	.	A	D	V	L	L	T	V	D	I	S	R	V	M	E	I	V	N	A	D	L
Template Known Secondary structure									S	S		G	.	.	.	.	G	G	T																							.	.	.									G	G	G			.	.	.	.							S											T	T
Template Predicted Secondary structure													.	.	.	.																										.	.	.														.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F	T
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	K	I	D	S	K	V	L	E	K	N	I	P	A	Q	.	.	.	.	.	.	.	.	.	F	R	D	S	N	D	Q	W	F	G	L	T	T	R	A	R	V	I	Y	T	S	K	D	R	V	G	K	L	P	A	G	F	D	Y	L	D	L	A	K	P	E	Y	K	G	K	V	C	V	R	S	G	K	N	S	Y
Template Known Secondary structure		B												S		G	G	.	.	.	.	.	.	.	.	.	G	B		T	T	S	S															T	T	T	T		S			T	T			G	G	G	G	G	S	G	G	G	T	T					S		T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	S	L	F	A	A	M	I	E	H	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	K	T	K	A	F	L	E	G	L	K	A	N	L	A	R	K	P	Q	G	G	D	R	D	Q	V	K	A	I	K	E	G	I	C	D	Y	S	I	G	N	S	Y	Y	Y	G
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	B	S	S				S												T	S		S						T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.																						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		273	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		Q	Q	K	I	A	S	G	D	.	.	.	.	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																																																						.	.
Template Conservation																																																																			.	.
Template Sequence		K	M	L	D	D	E	K	Q	K	S	W	A	E	A	A	I	I	N	F	P	S	G	E	H	G	T	H	K	N	I	S	G	V	V	I	A	K	H	S	P	N	K	A	N	A	V	K	L	I	E	Y	L	S	G	E	K	A	Q	G	L	Y	A	E	L	N	.	.	H	E	Y	P	V	K	E	G	I	E	P	S	A
Template Known Secondary structure						S	T	T	T						T								S	T	T		B										B	T	T		T	T													S												.	.					S	S	T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	R	E	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	A	G	W	V	N	A	L	E	Q	E	W	L	H	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	K	G	W	G	T	F	K	S	D	T	I	K	L	E	D	I	A	K	N	Y	E	A	A	L	K	L	V	D	E	V	K	F	D	D	F
Template Known Secondary structure						T					B										T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions